{
    "type": "genome",
    "identifier": "GCA_943841815.1",
    "organism": "uncultured Methylophilaceae bacterium",
    "title": "uncultured Methylophilaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Max Planck Institute for Marine Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943841815.1",
        "bioproject": "PRJEB52999",
        "biosample": "SAMEA110068897",
        "wgs_master": "CALSZO000000000.1",
        "refseq_category": "na",
        "taxid": "239732",
        "species_taxid": "239732",
        "organism_name": "uncultured Methylophilaceae bacterium",
        "infraspecific_name": "",
        "isolate": "ILMN-20200310-m54",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/27",
        "asm_name": "20200310_Bin_contigs_Bin_572_1-contigs.fa",
        "submitter": "Max Planck Institute for Marine Microbiology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/841/815/GCA_943841815.1_20200310_Bin_contigs_Bin_572_1-contigs.fa",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-27",
    "dateModified": "2022-11-27",
    "datePublished": "2022-11-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Methylophilaceae bacterium"
        ],
        "sample_taxid": [
            "239732"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.208 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.04,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "730509",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "65859",
        "N50 (bp)": "29151",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.4",
        "Number of CDSs": "726",
        "Average Protein Length": "300.6",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 71.04,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018607785.1",
                "gtdb_species": "s__BACL14 sp018607785",
                "ani": 99.6279,
                "matched_fragments": 192,
                "total_fragments": 222,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__BACL14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.94",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905181685.1",
                "gtdb_species": "s__BACL14 sp905181685",
                "ani": 80.9442,
                "matched_fragments": 108,
                "total_fragments": 222,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__BACL14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018657165.1",
                "gtdb_species": "s__BACL14 sp018657165",
                "ani": 80.4752,
                "matched_fragments": 119,
                "total_fragments": 222,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__BACL14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 15,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.503,
        "cell_length": 0.048,
        "doubling_h": -0.071,
        "growth_tmp": 30.333,
        "optimum_tmp": 30.041,
        "optimum_ph": 7.266,
        "genome_size": 2555180.003,
        "gc_content": 46.657,
        "coding_genes": 2203.6,
        "rRNA16S_genes": 1.8,
        "tRNA_genes": 43.0,
        "gram_stain": 0.0,
        "sporulation": 0.25,
        "motility": 0.75,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__BACL14",
        "s__BACL14 sp018607785"
    ],
    "_genome_taxon": [
        "uncultured",
        "Methylophilaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__BACL14",
        "s__BACL14 sp018607785",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Methylophilaceae",
        "BACL14",
        "BACL14",
        "sp018607785"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}