{
    "type": "genome",
    "identifier": "GCA_943844075.1",
    "organism": "uncultured Pontimonas sp.",
    "title": "uncultured Pontimonas sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Max Planck Institute for Marine Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943844075.1",
        "bioproject": "PRJEB52999",
        "biosample": "SAMEA110069193",
        "wgs_master": "CALTIU000000000.1",
        "refseq_category": "na",
        "taxid": "1698741",
        "species_taxid": "1698741",
        "organism_name": "uncultured Pontimonas sp.",
        "infraspecific_name": "",
        "isolate": "ILMN-20200430-m2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/27",
        "asm_name": "20200430_Bin_Bin_240_sub_1-contigs.fa",
        "submitter": "Max Planck Institute for Marine Microbiology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/844/075/GCA_943844075.1_20200430_Bin_Bin_240_sub_1-contigs.fa",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-27",
    "dateModified": "2022-11-27",
    "datePublished": "2022-11-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Pontimonas sp."
        ],
        "sample_taxid": [
            "1698741"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.341 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1172196",
        "Number of Sequences": "154",
        "Longest Sequences (bp)": "52871",
        "N50 (bp)": "9423",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "1036",
        "Average Protein Length": "292.8",
        "Coding Ratio (%)": "77.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pontimonas salivibrio",
                "strain": "strain=CL-TW6",
                "accession": "GCA_002950575.1",
                "taxid": 1159327,
                "species_taxid": 1159327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0694,
                "matched_fragments": 52,
                "total_fragments": 318,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017852615.1",
                "gtdb_species": "s__Pontimonas sp017852615",
                "ani": 97.6309,
                "matched_fragments": 238,
                "total_fragments": 318,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pontimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
                "min_intra_species_ani": "97.21",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001438965.1",
                "gtdb_species": "s__Pontimonas sp001438965",
                "ani": 80.1872,
                "matched_fragments": 109,
                "total_fragments": 318,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pontimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "99.36",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009704535.1",
                "gtdb_species": "s__Pontimonas sp009704535",
                "ani": 78.4815,
                "matched_fragments": 71,
                "total_fragments": 318,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pontimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 27.5,
        "optimum_ph": 8.0,
        "genome_size": 1760810.0,
        "gc_content": 58.3,
        "coding_genes": 1681.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 46.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Pontimonas",
        "s__Pontimonas sp017852615"
    ],
    "_genome_taxon": [
        "uncultured",
        "Pontimonas",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Pontimonas",
        "s__Pontimonas sp017852615",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Microbacteriaceae",
        "Pontimonas",
        "Pontimonas",
        "sp017852615"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}