{
    "type": "genome",
    "identifier": "GCA_943845065.1",
    "organism": "uncultured Candidatus Pelagibacter sp.",
    "title": "uncultured Candidatus Pelagibacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Max Planck Institute for Marine Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943845065.1",
        "bioproject": "PRJEB52999",
        "biosample": "SAMEA110069356",
        "wgs_master": "CALTMH000000000.1",
        "refseq_category": "na",
        "taxid": "372654",
        "species_taxid": "372654",
        "organism_name": "uncultured Candidatus Pelagibacter sp.",
        "infraspecific_name": "",
        "isolate": "ILMN-20200506-m44",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/27",
        "asm_name": "20200506_Bin_contigs_Bin_583_1-contigs.fa",
        "submitter": "Max Planck Institute for Marine Microbiology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/845/065/GCA_943845065.1_20200506_Bin_contigs_Bin_583_1-contigs.fa",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-27",
    "dateModified": "2022-11-27",
    "datePublished": "2022-11-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Candidatus Pelagibacter sp."
        ],
        "sample_taxid": [
            "372654"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.202 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.41,
        "contamination": 4.55,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "727969",
        "Number of Sequences": "60",
        "Longest Sequences (bp)": "33049",
        "N50 (bp)": "18711",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.1",
        "Number of CDSs": "705",
        "Average Protein Length": "302.8",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Candidatus Pelagibacter ubique",
                "strain": "strain=HTCC1062",
                "accession": "GCA_000012345.1",
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                "species_taxid": 198252,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 132,
                "total_fragments": 211,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 82.41,
            "contamination": 4.55,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "accession": "GCF_000472565.1",
                "gtdb_species": "s__Pelagibacter ubique_C",
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                "total_fragments": 211,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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                "mean_intra_species_ani": "100.00",
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                "total_fragments": 211,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "num_clustered_genomes": 2,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_902514755.1",
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        ]
    },
    "_bac2feature": {
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        "genome_size": null,
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        "bacillus_cell_shape": null,
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    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "g__Pelagibacter",
        "s__Pelagibacter sp943788075"
    ],
    "_genome_taxon": [
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        "Candidatus",
        "Pelagibacter",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Pelagibacterales",
        "f__Pelagibacteraceae",
        "g__Pelagibacter",
        "s__Pelagibacter sp943788075",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Pelagibacterales",
        "Pelagibacteraceae",
        "Pelagibacter",
        "Pelagibacter",
        "sp943788075"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}