{ "type": "genome", "identifier": "GCA_943845555.1", "organism": "uncultured Paraglaciecola sp.", "title": "uncultured Paraglaciecola sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Max Planck Institute for Marine Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943845555.1", "bioproject": "PRJEB52999", "biosample": "SAMEA110069267", "wgs_master": "CALTOC000000000.1", "refseq_category": "na", "taxid": "1765024", "species_taxid": "1765024", "organism_name": "uncultured Paraglaciecola sp.", "infraspecific_name": "", "isolate": "ILMN-20200430-m74", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "20200430_Bin_METABAT__238_1-contigs.fa", "submitter": "Max Planck Institute for Marine Microbiology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/845/555/GCA_943845555.1_20200430_Bin_METABAT_238_1-contigs.fa", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Paraglaciecola sp." ], "sample_taxid": [ "1765024" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "0.690 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2389842", "Number of Sequences": "207", "Longest Sequences (bp)": "50583", "N50 (bp)": "15424", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "2046", "Average Protein Length": "294.2", "Coding Ratio (%)": "75.6", "Number of rRNAs": "2", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraglaciecola psychrophila", "strain": "strain=170", "accession": "GCA_000315075.1", "taxid": 326544, "species_taxid": 326544, "relation_to_type": "type", "validated": true, "ani": 83.5789, "matched_fragments": 488, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola psychrophila", "strain": "strain=170", "accession": "GCA_000347635.1", "taxid": 326544, "species_taxid": 326544, "relation_to_type": "type", "validated": true, "ani": 83.4616, "matched_fragments": 512, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola arctica", "strain": "strain=BSs20135", "accession": "GCA_000314995.1", "taxid": 1128911, "species_taxid": 1128911, "relation_to_type": "type", "validated": true, "ani": 81.8628, "matched_fragments": 453, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola marina", "strain": "strain=D3211", "accession": "GCA_004360155.1", "taxid": 2500157, "species_taxid": 2500157, "relation_to_type": "type", "validated": true, "ani": 78.7132, "matched_fragments": 133, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola aquimarina", "strain": "strain=GGW-M5", "accession": "GCA_021532655.1", "taxid": 1235557, "species_taxid": 1235557, "relation_to_type": "type", "validated": true, "ani": 78.4224, "matched_fragments": 156, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiglaciecola lipolytica", "strain": "strain=E3", "accession": "GCA_000314975.1", "taxid": 477689, "species_taxid": 477689, "relation_to_type": "type", "validated": true, "ani": 78.3156, "matched_fragments": 53, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola mesophila", "strain": "strain=KMM 241", "accession": "GCA_000315015.1", "taxid": 197222, "species_taxid": 197222, "relation_to_type": "type", "validated": true, "ani": 78.1022, "matched_fragments": 72, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905479025.1", "gtdb_species": "s__Paraglaciecola sp905479025", "ani": 98.7389, "matched_fragments": 429, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002835935.1", "gtdb_species": "s__Paraglaciecola sp002835935", "ani": 86.5072, "matched_fragments": 544, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000347635.1", "gtdb_species": "s__Paraglaciecola psychrophila", "ani": 83.471, "matched_fragments": 511, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003232445.1", "gtdb_species": "s__Paraglaciecola arctica_A", "ani": 83.3037, "matched_fragments": 290, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000314995.1", "gtdb_species": "s__Paraglaciecola arctica", "ani": 81.8533, "matched_fragments": 452, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018861065.1", "gtdb_species": "s__Paraglaciecola arctica_B", "ani": 79.5073, "matched_fragments": 305, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009796765.1", "gtdb_species": "s__Paraglaciecola sp009796765", "ani": 78.6833, "matched_fragments": 157, "total_fragments": 692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Paraglaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.151, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 20.0, "optimum_tmp": 19.416, "optimum_ph": 7.375, "genome_size": 5322743.96, "gc_content": 43.376, "coding_genes": 4796.667, "rRNA16S_genes": 6.0, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Paraglaciecola", "s__Paraglaciecola sp905479025" ], "_genome_taxon": [ "uncultured", "Paraglaciecola", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Paraglaciecola", "s__Paraglaciecola sp905479025", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Paraglaciecola", "Paraglaciecola", "sp905479025" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }