{ "type": "genome", "identifier": "GCA_943845635.1", "organism": "uncultured Flavobacteriaceae bacterium", "title": "uncultured Flavobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Max Planck Institute for Marine Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943845635.1", "bioproject": "PRJEB52999", "biosample": "SAMEA110069310", "wgs_master": "CALTOK000000000.1", "refseq_category": "na", "taxid": "165436", "species_taxid": "165436", "organism_name": "uncultured Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "ILMN-20200506-m12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "20200506_Bin_Bin_100_1-contigs.fa", "submitter": "Max Planck Institute for Marine Microbiology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/845/635/GCA_943845635.1_20200506_Bin_Bin_100_1-contigs.fa", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriaceae bacterium" ], "sample_taxid": [ "165436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "0.612 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2136737", "Number of Sequences": "127", "Longest Sequences (bp)": "76753", "N50 (bp)": "22591", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "1776", "Average Protein Length": "344.6", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bizionia argentinensis", "strain": "strain=JUB59", "accession": "GCA_000224335.2", "taxid": 456455, "species_taxid": 456455, "relation_to_type": "type", "validated": true, "ani": 77.45, "matched_fragments": 63, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 77.025, "matched_fragments": 79, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 76.8067, "matched_fragments": 79, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.6965, "matched_fragments": 101, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa agariphila", "strain": "strain=type strain: KMM 3901", "accession": "GCA_000723205.1", "taxid": 320324, "species_taxid": 320324, "relation_to_type": "type", "validated": true, "ani": 76.6673, "matched_fragments": 78, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 76.6299, "matched_fragments": 99, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 76.553, "matched_fragments": 88, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.5329, "matched_fragments": 85, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 76.5173, "matched_fragments": 62, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia algoritergicola", "strain": "strain=APA-1", "accession": "GCA_008086165.1", "taxid": 291187, "species_taxid": 291187, "relation_to_type": "type", "validated": true, "ani": 76.4575, "matched_fragments": 84, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.4201, "matched_fragments": 79, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.4194, "matched_fragments": 81, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 76.4103, "matched_fragments": 95, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 76.3875, "matched_fragments": 81, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 76.3564, "matched_fragments": 86, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.3431, "matched_fragments": 80, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Changchengzhania lutea", "strain": "strain=SM1355", "accession": "GCA_006974145.1", "taxid": 2049305, "species_taxid": 2049305, "relation_to_type": "type", "validated": true, "ani": 76.2792, "matched_fragments": 76, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 76.2698, "matched_fragments": 59, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.2672, "matched_fragments": 79, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 76.2628, "matched_fragments": 80, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.2335, "matched_fragments": 67, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.2288, "matched_fragments": 84, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.2178, "matched_fragments": 92, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas spongiae", "strain": "strain=HN-E26", "accession": "GCA_003944795.1", "taxid": 2494697, "species_taxid": 2494697, "relation_to_type": "type", "validated": true, "ani": 76.0519, "matched_fragments": 85, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.0347, "matched_fragments": 59, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 76.0109, "matched_fragments": 70, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 75.9541, "matched_fragments": 86, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905479095.1", "gtdb_species": "s__Hel1-33-131 sp905479095", "ani": 99.6964, "matched_fragments": 575, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001735745.1", "gtdb_species": "s__Hel1-33-131 sp001735745", "ani": 81.697, "matched_fragments": 460, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018608765.1", "gtdb_species": "s__Hel1-33-131 sp018608765", "ani": 80.2922, "matched_fragments": 357, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018608725.1", "gtdb_species": "s__Hel1-33-131 sp018608725", "ani": 80.1309, "matched_fragments": 317, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018673215.1", "gtdb_species": "s__Hel1-33-131 sp018673215", "ani": 79.9399, "matched_fragments": 346, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018608735.1", "gtdb_species": "s__Hel1-33-131 sp018608735", "ani": 79.661, "matched_fragments": 275, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905181825.1", "gtdb_species": "s__Hel1-33-131 sp905181825", "ani": 78.9728, "matched_fragments": 236, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Hel1-33-131", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001874145.1", "gtdb_species": "s__Lacinutrix sp001874145", "ani": 76.3464, "matched_fragments": 84, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.335, "cell_length": 0.307, "doubling_h": 1.285, "growth_tmp": 26.48, "optimum_tmp": 26.613, "optimum_ph": 7.273, "genome_size": 3914984.758, "gc_content": 35.899, "coding_genes": 3178.027, "rRNA16S_genes": 3.891, "tRNA_genes": 50.834, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.361, "range_salinity": 0.615, "facultative_respiration": 0.043, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.944, "mesophilic_range_tmp": 0.895, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.104, "bacillus_cell_shape": 0.984, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Hel1-33-131", "s__Hel1-33-131 sp905479095" ], "_genome_taxon": [ "uncultured", "Flavobacteriaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Hel1-33-131", "s__Hel1-33-131 sp905479095", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Hel1-33-131", "Hel1-33-131", "sp905479095" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }