{ "type": "genome", "identifier": "GCA_943913095.1", "organism": "Pseudomonas helleri", "title": "Pseudomonas helleri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943913095.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110088926", "wgs_master": "CALTWU000000000.1", "refseq_category": "na", "taxid": "1608996", "species_taxid": "1608996", "organism_name": "Pseudomonas helleri", "infraspecific_name": "", "isolate": "WonhQNNPkY_bin.7.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/14", "asm_name": "WonhQNNPkY_bin.7.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "GCF_943913095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/095/GCA_943913095.1_WonhQNNPkY_bin.7.MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-14", "dateModified": "2022-06-14", "datePublished": "2022-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas helleri" ], "sample_taxid": [ "1608996" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.631 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5725991", "Number of Sequences": "247", "Longest Sequences (bp)": "138349", "N50 (bp)": "36365", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.1", "Number of CDSs": "5166", "Average Protein Length": "319.4", "Coding Ratio (%)": "86.5", "Number of rRNAs": "1", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas helleri", "strain": "strain=DSM 29165", "accession": "GCA_001043025.1", "taxid": 1608996, "species_taxid": 1608996, "relation_to_type": "type", "validated": true, "ani": 96.6874, "matched_fragments": 1540, "total_fragments": 1776, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas endophytica", "strain": "strain=BSTT44", "accession": "GCA_001411475.1", "taxid": 1563157, "species_taxid": 1563157, "relation_to_type": "type", "validated": true, "ani": 85.445, "matched_fragments": 1103, "total_fragments": 1776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=LMG 25555", "accession": "GCA_900106095.1", "taxid": 882211, 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