{
    "type": "genome",
    "identifier": "GCA_943913115.1",
    "organism": "Comamonas testosteroni",
    "title": "Comamonas testosteroni",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "NIH/NHGRI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943913115.1",
        "bioproject": "PRJEB47281",
        "biosample": "SAMEA110088916",
        "wgs_master": "CALTXG000000000.1",
        "refseq_category": "na",
        "taxid": "285",
        "species_taxid": "285",
        "organism_name": "Comamonas testosteroni",
        "infraspecific_name": "",
        "isolate": "1PG60C5oMN_bin.22.MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/14",
        "asm_name": "1PG60C5oMN_bin.22.MAG",
        "submitter": "NIH/NHGRI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/115/GCA_943913115.1_1PG60C5oMN_bin.22.MAG",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-14",
    "dateModified": "2022-06-14",
    "datePublished": "2022-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Comamonas testosteroni"
        ],
        "sample_taxid": [
            "285"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.921 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 47.92,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3230635",
        "Number of Sequences": "669",
        "Longest Sequences (bp)": "24604",
        "N50 (bp)": "5198",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "2484",
        "Average Protein Length": "286.8",
        "Coding Ratio (%)": "66.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Comamonas testosteroni",
                "strain": "strain=NCTC10698",
                "accession": "GCA_900461225.1",
                "taxid": 285,
                "species_taxid": 285,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.2347,
                "matched_fragments": 662,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas testosteroni",
                "strain": "strain=NBRC 14951",
                "accession": "GCA_000740035.1",
                "taxid": 285,
                "species_taxid": 285,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.174,
                "matched_fragments": 661,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas testosteroni",
                "strain": "strain=ATCC 11996",
                "accession": "GCA_000241525.2",
                "taxid": 285,
                "species_taxid": 285,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.1715,
                "matched_fragments": 663,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas thiooxydans",
                "strain": "strain=DSM 17888",
                "accession": "GCA_001517325.1",
                "taxid": 363952,
                "species_taxid": 363952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7401,
                "matched_fragments": 633,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas thiooxydans",
                "strain": "strain=DSM 17888",
                "accession": "GCA_001418295.1",
                "taxid": 363952,
                "species_taxid": 363952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7096,
                "matched_fragments": 634,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas thiooxydans",
                "strain": "strain=DSM 17888",
                "accession": "GCA_000964545.1",
                "taxid": 363952,
                "species_taxid": 363952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6779,
                "matched_fragments": 636,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrigena",
                "strain": "strain=NCTC1937",
                "accession": "GCA_900461435.1",
                "taxid": 32013,
                "species_taxid": 32013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8424,
                "matched_fragments": 376,
                "total_fragments": 748,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 47.92,
            "contamination": 8.33,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000241525.1",
                "gtdb_species": "s__Comamonas testosteroni",
                "ani": 98.1715,
                "matched_fragments": 663,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000761245.1",
                "gtdb_species": "s__Comamonas testosteroni_C",
                "ani": 94.4673,
                "matched_fragments": 634,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014076415.1",
                "gtdb_species": "s__Comamonas testosteroni_F",
                "ani": 93.8426,
                "matched_fragments": 635,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000964545.1",
                "gtdb_species": "s__Comamonas thiooxydans",
                "ani": 93.6779,
                "matched_fragments": 636,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "95.23",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_000739375.1",
                "gtdb_species": "s__Comamonas testosteroni_B",
                "ani": 92.2424,
                "matched_fragments": 636,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_900461435.1",
                "gtdb_species": "s__Comamonas terrigena",
                "ani": 81.8419,
                "matched_fragments": 376,
                "total_fragments": 748,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "95.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.253,
        "cell_length": 0.15,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.187,
        "genome_size": 5642149.455,
        "gc_content": 61.49,
        "coding_genes": 5102.667,
        "rRNA16S_genes": 5.75,
        "tRNA_genes": 87.25,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Comamonas",
        "s__Comamonas testosteroni"
    ],
    "_genome_taxon": [
        "Comamonas",
        "testosteroni",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Comamonas",
        "s__Comamonas testosteroni",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Comamonas",
        "Comamonas",
        "testosteroni"
    ],
    "_meo": [
        {
            "id": "MEO_0000586",
            "label": "skin"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}