{
    "type": "genome",
    "identifier": "GCA_943913145.1",
    "organism": "Staphylococcus simulans",
    "title": "Staphylococcus simulans",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "NIH/NHGRI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943913145.1",
        "bioproject": "PRJEB47281",
        "biosample": "SAMEA110088955",
        "wgs_master": "CALTWC000000000.1",
        "refseq_category": "na",
        "taxid": "1286",
        "species_taxid": "1286",
        "organism_name": "Staphylococcus simulans",
        "infraspecific_name": "",
        "isolate": "X38CjLEmET_bin.1.MAG",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/14",
        "asm_name": "X38CjLEmET_bin.1.MAG",
        "submitter": "NIH/NHGRI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/145/GCA_943913145.1_X38CjLEmET_bin.1.MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-14",
    "dateModified": "2022-06-14",
    "datePublished": "2022-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus simulans"
        ],
        "sample_taxid": [
            "1286"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.771 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2720772",
        "Number of Sequences": "106",
        "Longest Sequences (bp)": "274269",
        "N50 (bp)": "77965",
        "Gap Ratio (%)": "0.062482",
        "GCcontent (%)": "35.8",
        "Number of CDSs": "2594",
        "Average Protein Length": "296.7",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "12",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Staphylococcus simulans",
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                "species_taxid": 1286,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 791,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus simulans",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus carnosus",
                "strain": "strain=NCTC13825",
                "accession": "GCA_900458435.1",
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                "species_taxid": 1281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0551,
                "matched_fragments": 485,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=NCTC13827",
                "accession": "GCA_900637235.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0174,
                "matched_fragments": 484,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus condimenti",
                "strain": "strain=DSM 11674",
                "accession": "GCA_001014685.1",
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                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0127,
                "matched_fragments": 473,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus condimenti",
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                "accession": "GCA_001618885.1",
                "taxid": 70255,
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                "relation_to_type": "type",
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                "ani": 80.9872,
                "matched_fragments": 477,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus carnosus",
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                "accession": "GCA_016028275.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9847,
                "matched_fragments": 489,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus piscifermentans",
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                "accession": "GCA_003970555.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6933,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus piscifermentans",
                "strain": "strain=NCTC13836",
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                "species_taxid": 70258,
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                "ani": 80.5849,
                "matched_fragments": 463,
                "total_fragments": 848,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus shinii",
                "strain": "strain=K22-5M",
                "accession": "GCA_017583065.1",
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                "species_taxid": 2912228,
                "relation_to_type": "type",
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                "ani": 78.2377,
                "matched_fragments": 187,
                "total_fragments": 848,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Macrococcus armenti",
                "strain": "strain=JEK37",
                "accession": "GCA_020097135.1",
                "taxid": 2875764,
                "species_taxid": 2875764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8272,
                "matched_fragments": 68,
                "total_fragments": 848,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_002902285.1",
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                "matched_fragments": 772,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_003043455.1",
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                "num_clustered_genomes": 2,
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            },
            {
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                "matched_fragments": 639,
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                "num_clustered_genomes": 2,
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            },
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            },
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001224225.1",
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                "num_clustered_genomes": 22,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": -0.097,
        "doubling_h": -0.365,
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        "sporulation": 0.0,
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        "mesophilic_range_tmp": 1.0,
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    "_gtdb_taxon": [
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    ],
    "_genome_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
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        "Bacteria",
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        "Staphylococcales",
        "Staphylococcaceae",
        "Staphylococcus",
        "Staphylococcus",
        "simulans"
    ],
    "_meo": [
        {
            "id": "MEO_0000586",
            "label": "skin"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}