{ "type": "genome", "identifier": "GCA_943913315.1", "organism": "uncultured Acinetobacter sp.", "title": "uncultured Acinetobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943913315.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089396", "wgs_master": "CALTXU000000000.1", "refseq_category": "na", "taxid": "165433", "species_taxid": "165433", "organism_name": "uncultured Acinetobacter sp.", "infraspecific_name": "", "isolate": "9PavjJ5rA7_bin.49.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/16", "asm_name": "9PavjJ5rA7_bin.49.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/315/GCA_943913315.1_9PavjJ5rA7_bin.49.MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-16", "dateModified": "2022-06-16", "datePublished": "2022-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acinetobacter sp." ], "sample_taxid": [ "165433" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 38.43, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1896614", "Number of Sequences": "770", "Longest Sequences (bp)": "12274", "N50 (bp)": "2798", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.7", "Number of CDSs": "1212", "Average Protein Length": "263.2", "Coding Ratio (%)": "50.5", "Number of rRNAs": "1", "Number of tRNAs": "2", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 98.1019, "matched_fragments": 218, "total_fragments": 218, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 80.9634, "matched_fragments": 181, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=NCTC5866", "accession": "GCA_900699155.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 80.4523, "matched_fragments": 172, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 80.3695, "matched_fragments": 176, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.2329, "matched_fragments": 170, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 80.2183, "matched_fragments": 166, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 79.2189, "matched_fragments": 120, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9385, "matched_fragments": 93, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 77.9, "matched_fragments": 99, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 77.6649, "matched_fragments": 62, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, "species_taxid": 2715164, "relation_to_type": "type", "validated": true, "ani": 77.4029, "matched_fragments": 74, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seifertii", "strain": "strain=NIPH 973", "accession": "GCA_000368065.1", "taxid": 1530123, "species_taxid": 1530123, "relation_to_type": "type", "validated": true, "ani": 77.0393, "matched_fragments": 52, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 76.9787, "matched_fragments": 60, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 76.9787, "matched_fragments": 60, "total_fragments": 218, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 38.43, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368625.1", "gtdb_species": "s__Acinetobacter schindleri", "ani": 98.1019, "matched_fragments": 218, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "96.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 25, "status": "conclusive" }, { "accession": "GCF_002688565.1", "gtdb_species": "s__Acinetobacter sp002688565", "ani": 88.7642, "matched_fragments": 214, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000773685.1", "gtdb_species": "s__Acinetobacter sp000773685", "ani": 83.0163, "matched_fragments": 205, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000369625.1", "gtdb_species": "s__Acinetobacter variabilis", "ani": 80.9634, "matched_fragments": 181, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.87", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 48, "status": "-" }, { "accession": "GCF_015602705.1", "gtdb_species": 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lwoffii_D", "ani": 80.3899, "matched_fragments": 174, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001647535.1", "gtdb_species": "s__Acinetobacter sp001647535", "ani": 80.2075, "matched_fragments": 170, "total_fragments": 218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002367455.1", "gtdb_species": "s__Acinetobacter sp002367455", "ani": 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schindleri", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Moraxellaceae", "Acinetobacter", "Acinetobacter", "schindleri" ], "_meo": [ { "id": "MEO_0000586", "label": "skin" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }