{ "type": "genome", "identifier": "GCA_943913625.1", "organism": "uncultured Campylobacter sp.", "title": "uncultured Campylobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943913625.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089330", "wgs_master": "CALTYW000000000.1", "refseq_category": "na", "taxid": "218934", "species_taxid": "218934", "organism_name": "uncultured Campylobacter sp.", "infraspecific_name": "", "isolate": "DzT4OUfJr8_bin.32.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/14", "asm_name": "DzT4OUfJr8_bin.32.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/625/GCA_943913625.1_DzT4OUfJr8_bin.32.MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-14", "dateModified": "2022-06-14", "datePublished": "2022-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Campylobacter sp." ], "sample_taxid": [ "218934" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.21, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2267074", "Number of Sequences": "215", "Longest Sequences (bp)": "51017", "N50 (bp)": "14789", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "2028", "Average Protein Length": "305.2", "Coding Ratio (%)": "81.9", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 82.5568, "matched_fragments": 402, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 81.6895, "matched_fragments": 419, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 80.4912, "matched_fragments": 347, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mucifaciens", "strain": "strain=ATCC 700355", "accession": "GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 80.2605, "matched_fragments": 375, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 57.21, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_903645305.1", "gtdb_species": "s__Corynebacterium sp001764565", "ani": 82.7303, "matched_fragments": 442, "total_fragments": 649, "gtdb_taxonomy": 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