{ "type": "genome", "identifier": "GCA_943913675.1", "organism": "uncultured Propionibacteriaceae bacterium", "title": "uncultured Propionibacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943913675.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089204", "wgs_master": "CALTZD000000000.1", "refseq_category": "na", "taxid": "257457", "species_taxid": "257457", "organism_name": "uncultured Propionibacteriaceae bacterium", "infraspecific_name": "", "isolate": "ySUmJIt3o6_bin.57.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/16", "asm_name": "ySUmJIt3o6_bin.57.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/675/GCA_943913675.1_ySUmJIt3o6_bin.57.MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-16", "dateModified": "2022-06-16", "datePublished": "2022-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Propionibacteriaceae bacterium" ], "sample_taxid": [ "257457" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.528 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1845523", "Number of Sequences": "770", "Longest Sequences (bp)": "40492", "N50 (bp)": "2645", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "1105", "Average Protein Length": "273.5", "Coding Ratio (%)": "49.1", "Number of rRNAs": "1", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propioniferax innocua", "strain": "strain=DSM 8251", "accession": "GCA_006716235.1", "taxid": 1753, "species_taxid": 1753, "relation_to_type": "type", "validated": true, "ani": 81.1257, "matched_fragments": 108, "total_fragments": 212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella dayhoffiae", "strain": "strain=NML 130396", "accession": "GCA_002250625.1", "taxid": 2016507, "species_taxid": 2016507, "relation_to_type": "type", "validated": true, "ani": 78.1438, "matched_fragments": 57, "total_fragments": 212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella evansiae", "strain": "strain=NML 020265", "accession": "GCA_002250705.1", "taxid": 2016499, "species_taxid": 2016499, "relation_to_type": "type", "validated": true, "ani": 77.9569, "matched_fragments": 63, "total_fragments": 212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicoccus phenolivorans", "strain": "strain=DSM 17626", "accession": "GCA_000423085.1", "taxid": 266854, "species_taxid": 266854, "relation_to_type": "type", "validated": true, "ani": 77.5582, "matched_fragments": 58, "total_fragments": 212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicoccus phenolivorans", "strain": "strain=NBRC 107789", "accession": "GCA_001552335.1", "taxid": 266854, "species_taxid": 266854, "relation_to_type": "type", "validated": true, "ani": 77.5498, "matched_fragments": 56, "total_fragments": 212, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.98, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006716235.1", "gtdb_species": "s__Propioniferax innocua", "ani": 81.1257, "matched_fragments": 108, "total_fragments": 212, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propioniferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362375.1", "gtdb_species": "s__Enemella evansiae", "ani": 78.2263, "matched_fragments": 58, "total_fragments": 212, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Enemella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_002250625.1", "gtdb_species": "s__Enemella sp002250625", "ani": 78.1438, "matched_fragments": 57, "total_fragments": 212, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Enemella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000423085.1", "gtdb_species": "s__Granulicoccus phenolivorans", "ani": 77.5582, "matched_fragments": 58, "total_fragments": 212, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Granulicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.236, "cell_length": -0.062, "doubling_h": 0.91, "growth_tmp": 30.966, "optimum_tmp": 31.973, "optimum_ph": 7.27, "genome_size": 3331199.0, "gc_content": 63.915, "coding_genes": 2955.012, "rRNA16S_genes": 2.377, "tRNA_genes": 46.407, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.096, "anaerobic_respiration": 0.387, "aerobic_respiration": 0.516, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.541, "coccus_cell_shape": 0.416, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Propionibacteriales", "f__Propionibacteriaceae", "g__Propioniferax", "s__" 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