{
    "type": "genome",
    "identifier": "GCA_943913685.1",
    "organism": "Anaerococcus octavius",
    "title": "Anaerococcus octavius",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "NIH/NHGRI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943913685.1",
        "bioproject": "PRJEB47281",
        "biosample": "SAMEA110089071",
        "wgs_master": "CALTZC000000000.1",
        "refseq_category": "na",
        "taxid": "54007",
        "species_taxid": "54007",
        "organism_name": "Anaerococcus octavius",
        "infraspecific_name": "",
        "isolate": "DCeZfn8tmZ_bin.11.MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/14",
        "asm_name": "DCeZfn8tmZ_bin.11.MAG",
        "submitter": "NIH/NHGRI",
        "gbrs_paired_asm": "GCF_943913685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/913/685/GCA_943913685.1_DCeZfn8tmZ_bin.11.MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-14",
    "dateModified": "2022-06-14",
    "datePublished": "2022-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerococcus octavius"
        ],
        "sample_taxid": [
            "54007"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.477 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1714535",
        "Number of Sequences": "94",
        "Longest Sequences (bp)": "95652",
        "N50 (bp)": "28672",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "1588",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Anaerococcus octavius",
                "strain": "strain=NCTC9810",
                "accession": "GCA_900445265.1",
                "taxid": 54007,
                "species_taxid": 54007,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6684,
                "matched_fragments": 493,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerococcus nagyae",
                "strain": "strain=DSM 101193",
                "accession": "GCA_017874535.1",
                "taxid": 1755241,
                "species_taxid": 1755241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6649,
                "matched_fragments": 269,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus provencensis",
                "strain": "strain=9402080",
                "accession": "GCA_000312365.2",
                "taxid": 938293,
                "species_taxid": 938293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1165,
                "matched_fragments": 224,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus urinomassiliensis",
                "strain": "strain=Marseille-P2143",
                "accession": "GCA_900128425.1",
                "taxid": 1745712,
                "species_taxid": 1745712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4925,
                "matched_fragments": 216,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus mediterraneensis",
                "strain": "strain=Marseille-P2765",
                "accession": "GCA_900128415.1",
                "taxid": 1870984,
                "species_taxid": 1870984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.573,
                "matched_fragments": 101,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginimassiliensis",
                "strain": "strain=Marseille-P4512",
                "accession": "GCA_900626155.1",
                "taxid": 2042308,
                "species_taxid": 2042308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5686,
                "matched_fragments": 129,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus prevotii",
                "strain": "strain=NCTC11806",
                "accession": "GCA_900445285.1",
                "taxid": 33034,
                "species_taxid": 33034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9611,
                "matched_fragments": 102,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus prevotii",
                "strain": "strain=DSM 20548",
                "accession": "GCA_000024105.1",
                "taxid": 33034,
                "species_taxid": 33034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9544,
                "matched_fragments": 102,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus hydrogenalis",
                "strain": "strain=DSM 7454",
                "accession": "GCA_000173355.1",
                "taxid": 33029,
                "species_taxid": 33029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9285,
                "matched_fragments": 113,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginalis",
                "strain": "strain=FDAARGOS_988",
                "accession": "GCA_016127475.1",
                "taxid": 33037,
                "species_taxid": 33037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.234,
                "matched_fragments": 115,
                "total_fragments": 519,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900445265.1",
                "gtdb_species": "s__Anaerococcus octavius",
                "ani": 98.6684,
                "matched_fragments": 493,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016798225.1",
                "gtdb_species": "s__Anaerococcus sp900541365",
                "ani": 83.455,
                "matched_fragments": 370,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017874535.1",
                "gtdb_species": "s__Anaerococcus nagyae",
                "ani": 80.6875,
                "matched_fragments": 268,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000312365.2",
                "gtdb_species": "s__Anaerococcus provencensis",
                "ani": 80.1165,
                "matched_fragments": 224,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900128425.1",
                "gtdb_species": "s__Anaerococcus urinomassiliensis",
                "ani": 79.5152,
                "matched_fragments": 215,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900232825.1",
                "gtdb_species": "s__Anaerococcus sp900232825",
                "ani": 78.935,
                "matched_fragments": 192,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.02",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900128415.1",
                "gtdb_species": "s__Anaerococcus mediterraneensis",
                "ani": 78.573,
                "matched_fragments": 101,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000308255.3",
                "gtdb_species": "s__Anaerococcus pacaensis",
                "ani": 78.3558,
                "matched_fragments": 179,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
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                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000307225.1",
                "gtdb_species": "s__Anaerococcus vaginalis_B",
                "ani": 77.0652,
                "matched_fragments": 116,
                "total_fragments": 519,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": -0.206,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 1890291.0,
        "gc_content": 32.566,
        "coding_genes": 1860.0,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 45.5,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Peptoniphilaceae",
        "g__Anaerococcus",
        "s__Anaerococcus octavius"
    ],
    "_genome_taxon": [
        "Anaerococcus",
        "octavius",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Peptoniphilaceae",
        "g__Anaerococcus",
        "s__Anaerococcus octavius",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Tissierellales",
        "Peptoniphilaceae",
        "Anaerococcus",
        "Anaerococcus",
        "octavius"
    ],
    "_meo": [
        {
            "id": "MEO_0000586",
            "label": "skin"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}