{
    "type": "genome",
    "identifier": "GCA_943914545.1",
    "organism": "uncultured Kytococcus sp.",
    "title": "uncultured Kytococcus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "NIH/NHGRI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943914545.1",
        "bioproject": "PRJEB47281",
        "biosample": "SAMEA110089350",
        "wgs_master": "CALUCL000000000.1",
        "refseq_category": "na",
        "taxid": "1074240",
        "species_taxid": "1074240",
        "organism_name": "uncultured Kytococcus sp.",
        "infraspecific_name": "",
        "isolate": "OTCixwETZz_bin.31.MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/16",
        "asm_name": "OTCixwETZz_bin.31.MAG",
        "submitter": "NIH/NHGRI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/914/545/GCA_943914545.1_OTCixwETZz_bin.31.MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-16",
    "dateModified": "2022-06-16",
    "datePublished": "2022-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Kytococcus sp."
        ],
        "sample_taxid": [
            "1074240"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.502 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 42.77,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1789238",
        "Number of Sequences": "883",
        "Longest Sequences (bp)": "7447",
        "N50 (bp)": "2123",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.5",
        "Number of CDSs": "1037",
        "Average Protein Length": "247.6",
        "Coding Ratio (%)": "43.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kytococcus sedentarius",
                "strain": "strain=NCTC11040",
                "accession": "GCA_900452405.1",
                "taxid": 1276,
                "species_taxid": 1276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5508,
                "matched_fragments": 113,
                "total_fragments": 139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kytococcus sedentarius",
                "strain": "strain=FDAARGOS_1061",
                "accession": "GCA_016127495.1",
                "taxid": 1276,
                "species_taxid": 1276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4559,
                "matched_fragments": 114,
                "total_fragments": 139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kytococcus sedentarius",
                "strain": "strain=DSM 20547",
                "accession": "GCA_000023925.1",
                "taxid": 1276,
                "species_taxid": 1276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4419,
                "matched_fragments": 115,
                "total_fragments": 139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kytococcus aerolatus",
                "strain": "strain=DSM 22179",
                "accession": "GCA_900187395.1",
                "taxid": 592308,
                "species_taxid": 592308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.169,
                "matched_fragments": 87,
                "total_fragments": 139,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 42.77,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000023925.1",
                "gtdb_species": "s__Kytococcus sedentarius",
                "ani": 84.4419,
                "matched_fragments": 115,
                "total_fragments": 139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002847825.1",
                "gtdb_species": "s__Kytococcus schroeteri",
                "ani": 83.4384,
                "matched_fragments": 100,
                "total_fragments": 139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900187395.1",
                "gtdb_species": "s__Kytococcus aerolatus",
                "ani": 81.169,
                "matched_fragments": 87,
                "total_fragments": 139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Kytococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.028,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 31.5,
        "optimum_ph": null,
        "genome_size": 2540144.857,
        "gc_content": 71.6,
        "coding_genes": 2508.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Dermatophilaceae",
        "g__Kytococcus",
        "s__"
    ],
    "_genome_taxon": [
        "uncultured",
        "Kytococcus",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Dermatophilaceae",
        "g__Kytococcus",
        "s__",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Dermatophilaceae",
        "Kytococcus",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000586",
            "label": "skin"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}