{ "type": "genome", "identifier": "GCA_943914735.1", "organism": "uncultured Corynebacterium sp.", "title": "uncultured Corynebacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943914735.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089431", "wgs_master": "CALUDE000000000.1", "refseq_category": "na", "taxid": "159447", "species_taxid": "159447", "organism_name": "uncultured Corynebacterium sp.", "infraspecific_name": "", "isolate": "mcu5KeYWBs_bin.5.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/15", "asm_name": "mcu5KeYWBs_bin.5.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/914/735/GCA_943914735.1_mcu5KeYWBs_bin.5.MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-15", "dateModified": "2022-06-15", "datePublished": "2022-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Corynebacterium sp." ], "sample_taxid": [ "159447" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.64, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2319761", "Number of Sequences": "88", "Longest Sequences (bp)": "174563", "N50 (bp)": "43663", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "2165", "Average Protein Length": "315.5", "Coding Ratio (%)": "88.3", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium appendicis", "strain": "strain=DSM 44531", "accession": "GCA_900156665.1", "taxid": 163202, "species_taxid": 163202, "relation_to_type": "type", "validated": true, "ani": 87.7358, "matched_fragments": 590, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urinipleomorphum", "strain": "strain=Marseille-P2799", "accession": "GCA_900155535.1", "taxid": 1852380, "species_taxid": 1852380, "relation_to_type": "type", "validated": true, "ani": 84.1336, "matched_fragments": 588, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuscaniense", "strain": "strain=CCUG 51321T", "accession": "GCA_008693065.1", "taxid": 302449, "species_taxid": 302449, "relation_to_type": "type", "validated": true, "ani": 79.7129, "matched_fragments": 312, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 79.5565, "matched_fragments": 304, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 79.5436, "matched_fragments": 346, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 79.525, "matched_fragments": 337, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014490555.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 79.4778, "matched_fragments": 316, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 79.4563, "matched_fragments": 325, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 79.4457, "matched_fragments": 312, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014267325.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 79.4382, "matched_fragments": 314, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 79.2319, "matched_fragments": 298, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mucifaciens", "strain": "strain=ATCC 700355", "accession": "GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 78.9744, "matched_fragments": 283, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium maris", "strain": "strain=DSM 45190", "accession": "GCA_000442645.1", "taxid": 575200, "species_taxid": 575200, "relation_to_type": "type", "validated": true, "ani": 78.3355, "matched_fragments": 232, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia suismassiliense", "strain": "strain=S-137", "accession": "GCA_900269665.1", "taxid": 2077092, "species_taxid": 2077092, "relation_to_type": "type", "validated": true, "ani": 76.1292, "matched_fragments": 107, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia polyisoprenivorans", 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