{ "type": "genome", "identifier": "GCA_943914975.1", "organism": "Prevotella denticola", "title": "Prevotella denticola", "description": "derived from metagenome; fragmented assembly; genome length too small", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943914975.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089185", "wgs_master": "CALUEC000000000.1", "refseq_category": "na", "taxid": "28129", "species_taxid": "28129", "organism_name": "Prevotella denticola", "infraspecific_name": "", "isolate": "6OBSmfvovM_bin.46.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/16", "asm_name": "6OBSmfvovM_bin.46.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/914/975/GCA_943914975.1_6OBSmfvovM_bin.46.MAG", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-16", "dateModified": "2022-06-16", "datePublished": "2022-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella denticola" ], "sample_taxid": [ "28129" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.55, "contamination": 0.93, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2118051", "Number of Sequences": "777", "Longest Sequences (bp)": "17482", "N50 (bp)": "3241", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.2", "Number of CDSs": "1081", "Average Protein Length": "316.4", "Coding Ratio (%)": "48.4", "Number of rRNAs": "1", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 98.557, "matched_fragments": 299, "total_fragments": 301, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 98.5475, "matched_fragments": 299, "total_fragments": 301, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 90.452, "matched_fragments": 262, "total_fragments": 301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 79.9421, "matched_fragments": 178, "total_fragments": 301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 79.9411, "matched_fragments": 176, "total_fragments": 301, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.55, "contamination": 0.93, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_900454835.1", "gtdb_species": "s__Prevotella denticola", "ani": 98.5475, "matched_fragments": 299, "total_fragments": 301, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_000191065.1", "gtdb_species": "s__Prevotella multiformis", "ani": 90.452, "matched_fragments": 262, "total_fragments": 301, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_900762125.1", "gtdb_species": "s__Prevotella sp900762125", "ani": 76.735, "matched_fragments": 52, "total_fragments": 301, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.155, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 34.75, "optimum_ph": 7.109, "genome_size": 2968632.2, "gc_content": 50.38, 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"skin" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }