{ "type": "genome", "identifier": "GCA_944320175.1", "organism": "Bifidobacterium pullorum", "title": "Bifidobacterium pullorum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944320175.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110133904", "wgs_master": "CALUGL000000000.1", "refseq_category": "na", "taxid": "78448", "species_taxid": "78448", "organism_name": "Bifidobacterium pullorum", "infraspecific_name": "", "isolate": "BRZ_MH__bin54", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_MH__bin54", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "GCF_944320175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/320/175/GCA_944320175.1_BRZ_MH_bin54", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium pullorum" ], "sample_taxid": [ "78448" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.490 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1756493", "Number of Sequences": "158", "Longest Sequences (bp)": "80846", "N50 (bp)": "15528", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "1344", "Average Protein Length": "343.7", "Coding Ratio (%)": "78.9", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium pullorum subsp. gallinarum", "strain": "strain=LMG 11586", "accession": "GCA_000741215.1", "taxid": 78344, "species_taxid": 78448, "relation_to_type": "type", "validated": true, "ani": 90.6938, "matched_fragments": 449, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pullorum subsp. gallinarum", "strain": "strain=DSM 20670", "accession": "GCA_000771505.1", "taxid": 78344, "species_taxid": 78448, "relation_to_type": "type", "validated": true, "ani": 90.6839, "matched_fragments": 442, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pullorum subsp. saeculare", "strain": "strain=DSM 6531", "accession": "GCA_000770965.1", "taxid": 78257, "species_taxid": 78448, "relation_to_type": "type", "validated": true, "ani": 90.6797, "matched_fragments": 436, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pullorum subsp. saeculare", "strain": "strain=LMG 14934", "accession": "GCA_000741375.1", "taxid": 78257, "species_taxid": 78448, "relation_to_type": "type", "validated": true, "ani": 90.6074, "matched_fragments": 458, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium phasiani", "strain": "strain=6T3", "accession": "GCA_019331775.1", "taxid": 2834431, "species_taxid": 2834431, "relation_to_type": "type", "validated": true, "ani": 84.7699, "matched_fragments": 418, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" 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