{
    "type": "genome",
    "identifier": "GCA_944320185.1",
    "organism": "Coprobacter secundus",
    "title": "Coprobacter secundus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944320185.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110134084",
        "wgs_master": "CALUGN000000000.1",
        "refseq_category": "na",
        "taxid": "1501392",
        "species_taxid": "1501392",
        "organism_name": "Coprobacter secundus",
        "infraspecific_name": "",
        "isolate": "BRZ_HB__bin12",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_HB__bin12",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "GCF_944320185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/320/185/GCA_944320185.1_BRZ_HB_bin12",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coprobacter secundus"
        ],
        "sample_taxid": [
            "1501392"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.008 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3571656",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "690558",
        "N50 (bp)": "562209",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "2719",
        "Average Protein Length": "388.5",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Coprobacter secundus subsp. similis",
                "strain": "strain=2CBH44",
                "accession": "GCA_015097275.1",
                "taxid": 2751153,
                "species_taxid": 1501392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1496,
                "matched_fragments": 1008,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Coprobacter fastidiosus",
                "strain": "strain=NSB1",
                "accession": "GCA_003634345.1",
                "taxid": 1099853,
                "species_taxid": 1099853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8068,
                "matched_fragments": 141,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacter fastidiosus",
                "strain": "strain=NSB1",
                "accession": "GCA_000473955.1",
                "taxid": 1099853,
                "species_taxid": 1099853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7726,
                "matched_fragments": 144,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Barnesiella intestinihominis",
                "strain": "strain=YIT 11860",
                "accession": "GCA_000296465.1",
                "taxid": 487174,
                "species_taxid": 487174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1715,
                "matched_fragments": 61,
                "total_fragments": 1180,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000803105.1",
                "gtdb_species": "s__Coprobacter secundus",
                "ani": 99.0741,
                "matched_fragments": 1108,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902363425.1",
                "gtdb_species": "s__CABJAA01 sp003150885",
                "ani": 77.855,
                "matched_fragments": 82,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__CABJAA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003634345.1",
                "gtdb_species": "s__Coprobacter fastidiosus",
                "ani": 77.8133,
                "matched_fragments": 140,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.59",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_900545915.1",
                "gtdb_species": "s__Coprobacter sp900545915",
                "ani": 77.5217,
                "matched_fragments": 139,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000296465.1",
                "gtdb_species": "s__Barnesiella intestinihominis",
                "ani": 77.214,
                "matched_fragments": 60,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCA_017467745.1",
                "gtdb_species": "s__Gallibacteroides sp017467745",
                "ani": 76.5151,
                "matched_fragments": 53,
                "total_fragments": 1180,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__CHK158-818;g__Gallibacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.603,
        "cell_length": 0.096,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.5,
        "optimum_ph": null,
        "genome_size": 4138744.0,
        "gc_content": 38.3,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Coprobacteraceae",
        "g__Coprobacter",
        "s__Coprobacter secundus"
    ],
    "_genome_taxon": [
        "Coprobacter",
        "secundus",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Coprobacteraceae",
        "g__Coprobacter",
        "s__Coprobacter secundus",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Coprobacteraceae",
        "Coprobacter",
        "Coprobacter",
        "secundus"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}