{ "type": "genome", "identifier": "GCA_944320295.1", "organism": "uncultured Bacteroides sp.", "title": "uncultured Bacteroides sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944320295.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110133970", "wgs_master": "CALUGY000000000.1", "refseq_category": "na", "taxid": "162156", "species_taxid": "162156", "organism_name": "uncultured Bacteroides sp.", "infraspecific_name": "", "isolate": "E20__bin320", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "E20__bin320", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/320/295/GCA_944320295.1_E20_bin320", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroides sp." ], "sample_taxid": [ "162156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.727 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2533344", "Number of Sequences": "116", "Longest Sequences (bp)": "88556", "N50 (bp)": "38917", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.6", "Number of CDSs": "1934", "Average Protein Length": "360.5", "Coding Ratio (%)": "82.6", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_900129655.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 77.0517, "matched_fragments": 126, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_000195615.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 77.0281, "matched_fragments": 127, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides heparinolyticus", "strain": "strain=DSM 23917", "accession": "GCA_004342845.1", "taxid": 28113, "species_taxid": 28113, "relation_to_type": "type", "validated": true, "ani": 77.0195, "matched_fragments": 126, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides gallinarum", "strain": "strain=DSM 18171", "accession": "GCA_000374365.1", "taxid": 376806, "species_taxid": 376806, "relation_to_type": "type", "validated": true, "ani": 76.9569, "matched_fragments": 158, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides gallinarum", "strain": "strain=JCM 13658", "accession": "GCA_000613665.1", "taxid": 376806, "species_taxid": 376806, "relation_to_type": "type", "validated": true, "ani": 76.9304, "matched_fragments": 155, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides zoogleoformans", "strain": "strain=ATCC 33285", "accession": "GCA_007830715.1", "taxid": 28119, "species_taxid": 28119, "relation_to_type": "type", "validated": true, "ani": 76.8214, "matched_fragments": 132, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides zoogleoformans", "strain": "strain=ATCC 33285", "accession": "GCA_002998435.1", "taxid": 28119, "species_taxid": 28119, "relation_to_type": "type", "validated": true, "ani": 76.7718, "matched_fragments": 135, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola barnesiae", "strain": "strain=JCM 13652", "accession": "GCA_000613645.1", "taxid": 376804, "species_taxid": 376804, "relation_to_type": "type", "validated": true, "ani": 76.7578, "matched_fragments": 62, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola barnesiae", "strain": "strain=DSM 18169", "accession": "GCA_000374585.1", "taxid": 376804, "species_taxid": 376804, "relation_to_type": "type", "validated": true, "ani": 76.7559, "matched_fragments": 63, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides muris", "strain": "strain=KH365_2", "accession": "GCA_024704915.1", "taxid": 2937417, "species_taxid": 2937417, "relation_to_type": "type", "validated": true, "ani": 76.7512, "matched_fragments": 143, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_000154525.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7056, "matched_fragments": 142, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 76.701, "matched_fragments": 146, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides propionicigenes", "strain": "strain=NSJ-90", "accession": "GCA_018390535.1", "taxid": 2834112, "species_taxid": 2834112, "relation_to_type": "type", "validated": true, "ani": 76.6937, "matched_fragments": 104, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fluxus", "strain": "strain=YIT 12057", "accession": "GCA_000195635.1", "taxid": 626930, "species_taxid": 626930, "relation_to_type": "type", "validated": true, "ani": 76.6571, "matched_fragments": 121, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_000155815.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 76.5099, "matched_fragments": 117, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_025146565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 76.4996, "matched_fragments": 118, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=NCTC11155", "accession": "GCA_900445565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 76.4996, "matched_fragments": 118, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI-5482", "accession": "GCA_000011065.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 76.4559, "matched_fragments": 50, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI-5482", "accession": "GCA_002959695.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 76.4559, "matched_fragments": 50, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=NCTC10582", "accession": "GCA_900445595.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 76.4559, "matched_fragments": 50, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI 5482", "accession": "GCA_022453665.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 76.4559, "matched_fragments": 50, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercorirosoris", "strain": "strain=JCM 17103", "accession": "GCA_000614165.1", "taxid": 871324, "species_taxid": 871324, "relation_to_type": "type", "validated": true, "ani": 76.3723, "matched_fragments": 114, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola faecicola", "strain": "strain=AGMB03916", "accession": "GCA_013618865.1", "taxid": 2739389, "species_taxid": 2739389, "relation_to_type": "type", "validated": true, "ani": 75.9761, "matched_fragments": 52, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900128475.1", "gtdb_species": "s__Bacteroides massiliensis", "ani": 79.1913, "matched_fragments": 238, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.57", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_019115825.1", "gtdb_species": "s__Bacteroides pullicola", "ani": 78.9517, "matched_fragments": 235, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019118325.1", "gtdb_species": "s__Bacteroides intestinavium", "ani": 78.775, "matched_fragments": 209, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019116285.1", "gtdb_species": "s__Bacteroides merdigallinarum", "ani": 78.6537, "matched_fragments": 223, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883785.1", "gtdb_species": "s__Bacteroides intestinipullorum", "ani": 78.5667, "matched_fragments": 204, "total_fragments": 785, "gtdb_taxonomy": 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