{ "type": "genome", "identifier": "GCA_944320845.1", "organism": "uncultured Phocaeicola sp.", "title": "uncultured Phocaeicola sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944320845.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134014", "wgs_master": "CALUJA000000000.1", "refseq_category": "na", "taxid": "990718", "species_taxid": "990718", "organism_name": "uncultured Phocaeicola sp.", "infraspecific_name": "", "isolate": "BRZ_R__bin125", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_R__bin125", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/320/845/GCA_944320845.1_BRZ_R_bin125", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Phocaeicola sp." ], "sample_taxid": [ "990718" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2802503", "Number of Sequences": "36", "Longest Sequences (bp)": "276602", "N50 (bp)": "134175", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.5", "Number of CDSs": "2259", "Average Protein Length": "369.8", "Coding Ratio (%)": "89.4", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phocaeicola faecium", "strain": "strain=Sa1YUN3", "accession": "GCA_014837055.1", "taxid": 2762213, "species_taxid": 2762213, "relation_to_type": "type", "validated": true, "ani": 78.7073, "matched_fragments": 320, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola salanitronis", "strain": "strain=DSM 18170", "accession": "GCA_000190575.1", "taxid": 376805, "species_taxid": 376805, "relation_to_type": "type", "validated": true, "ani": 78.0217, "matched_fragments": 229, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola intestinalis", "strain": "strain=Sa1CVN1", "accession": "GCA_014837065.1", "taxid": 2762212, "species_taxid": 2762212, "relation_to_type": "type", "validated": true, "ani": 77.9499, "matched_fragments": 217, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola coprophilus", "strain": "strain=JCM 13818", "accession": "GCA_001315785.1", "taxid": 387090, "species_taxid": 387090, "relation_to_type": "type", "validated": true, "ani": 77.8952, "matched_fragments": 207, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola coprophilus", "strain": "strain=DSM 18228", "accession": "GCA_000157915.1", "taxid": 387090, "species_taxid": 387090, "relation_to_type": "type", "validated": true, "ani": 77.8352, "matched_fragments": 218, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola barnesiae", "strain": "strain=DSM 18169", "accession": "GCA_000374585.1", "taxid": 376804, "species_taxid": 376804, "relation_to_type": "type", "validated": true, "ani": 77.7417, "matched_fragments": 219, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola plebeius", "strain": "strain=DSM 17135", "accession": "GCA_000187895.1", "taxid": 310297, "species_taxid": 310297, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7398, "matched_fragments": 225, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola barnesiae", "strain": "strain=JCM 13652", "accession": "GCA_000613645.1", "taxid": 376804, "species_taxid": 376804, "relation_to_type": "type", "validated": true, "ani": 77.7262, "matched_fragments": 218, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola faecicola", "strain": "strain=AGMB03916", "accession": "GCA_013618865.1", "taxid": 2739389, "species_taxid": 2739389, "relation_to_type": "type", "validated": true, "ani": 77.5375, "matched_fragments": 193, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_002959635.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4015, "matched_fragments": 71, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=FDAARGOS_1516", "accession": "GCA_020149745.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3254, "matched_fragments": 72, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_001314995.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3061, "matched_fragments": 69, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_025146775.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2644, "matched_fragments": 70, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=NCTC11153", "accession": "GCA_900445505.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2626, "matched_fragments": 73, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides luhongzhouii", "strain": "strain=HF-5141", "accession": "GCA_009193295.2", "taxid": 2650158, "species_taxid": 2650158, "relation_to_type": "type", "validated": true, "ani": 77.1309, "matched_fragments": 70, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides thetaiotaomicron", "strain": "strain=VPI 5482", "accession": "GCA_022453665.1", "taxid": 818, "species_taxid": 818, "relation_to_type": "type", "validated": true, "ani": 77.0269, "matched_fragments": 75, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8907, "matched_fragments": 107, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_000154205.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", 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"total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=FDAARGOS_901", "accession": "GCA_016117815.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 76.8316, "matched_fragments": 115, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides cellulosilyticus", "strain": "strain=DSM 14838", "accession": "GCA_000158035.1", "taxid": 246787, "species_taxid": 246787, "relation_to_type": "type", "validated": true, "ani": 76.7172, "matched_fragments": 74, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016900695.1", "gtdb_species": "s__Phocaeicola sp900540105", "ani": 78.4701, "matched_fragments": 323, "total_fragments": 920, "gtdb_taxonomy": 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