{ "type": "genome", "identifier": "GCA_944320945.1", "organism": "uncultured Bacteroides sp.", "title": "uncultured Bacteroides sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944320945.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110133971", "wgs_master": "CALUJK000000000.1", "refseq_category": "na", "taxid": "162156", "species_taxid": "162156", "organism_name": "uncultured Bacteroides sp.", "infraspecific_name": "", "isolate": "E20__bin93", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "E20__bin93", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/320/945/GCA_944320945.1_E20_bin93", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroides sp." ], "sample_taxid": [ "162156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.709 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2460323", "Number of Sequences": "138", "Longest Sequences (bp)": "82557", "N50 (bp)": "27181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.4", "Number of CDSs": "1845", "Average Protein Length": "372.3", "Coding Ratio (%)": "83.8", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides muris", "strain": "strain=KH365_2", "accession": "GCA_024704915.1", "taxid": 2937417, "species_taxid": 2937417, "relation_to_type": "type", "validated": true, "ani": 78.2448, "matched_fragments": 137, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_000154205.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.1625, "matched_fragments": 156, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=DSM 6597", "accession": "GCA_900107315.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.1455, "matched_fragments": 156, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=FDAARGOS_901", "accession": "GCA_016117815.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.1435, "matched_fragments": 159, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_025147485.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.1429, "matched_fragments": 159, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides propionicigenes", "strain": "strain=NSJ-90", "accession": "GCA_018390535.1", "taxid": 2834112, "species_taxid": 2834112, "relation_to_type": "type", "validated": true, "ani": 78.1077, "matched_fragments": 146, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides cellulosilyticus", "strain": "strain=DSM 14838", "accession": "GCA_000158035.1", "taxid": 246787, "species_taxid": 246787, "relation_to_type": "type", "validated": true, "ani": 77.9486, "matched_fragments": 119, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fluxus", "strain": "strain=YIT 12057", "accession": "GCA_000195635.1", "taxid": 626930, "species_taxid": 626930, "relation_to_type": "type", "validated": true, "ani": 77.8727, "matched_fragments": 141, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=NCTC11155", "accession": "GCA_900445565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 77.8503, "matched_fragments": 143, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_000155815.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 77.847, "matched_fragments": 144, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides finegoldii", "strain": "strain=DSM 17565", "accession": "GCA_000156195.1", "taxid": 338188, "species_taxid": 338188, "relation_to_type": "suspected-type", "validated": true, "ani": 77.789, "matched_fragments": 100, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_025146565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 77.7818, "matched_fragments": 146, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_900129655.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 77.7449, "matched_fragments": 147, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_000154525.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7295, "matched_fragments": 157, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides oleiciplenus", "strain": "strain=YIT 12058", "accession": "GCA_000315485.1", "taxid": 626931, "species_taxid": 626931, "relation_to_type": "type", "validated": true, "ani": 77.7253, "matched_fragments": 125, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7141, "matched_fragments": 159, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides faecichinchillae", "strain": "strain=JCM 17102", "accession": "GCA_000614145.1", "taxid": 871325, "species_taxid": 871325, "relation_to_type": "type", "validated": true, "ani": 77.7101, "matched_fragments": 76, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_000195615.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 77.707, 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752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=NCTC 9343", "accession": "GCA_900445515.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 87, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=FDAARGOS_1512", "accession": "GCA_020097275.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 77.3573, "matched_fragments": 87, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=ATCC 25285", "accession": "GCA_001997325.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 77.282, "matched_fragments": 87, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides faecalis", "strain": "strain=KCTC 15687", "accession": "GCA_003865075.1", "taxid": 2447885, "species_taxid": 2447885, "relation_to_type": "type", "validated": true, "ani": 77.1887, "matched_fragments": 81, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=NCTC 9343", "accession": "GCA_000025985.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 77.1425, "matched_fragments": 86, "total_fragments": 752, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000154205.1", "gtdb_species": "s__Bacteroides uniformis", "ani": 78.1862, "matched_fragments": 155, "total_fragments": 752, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.69", "num_clustered_genomes": 301, "status": "-" }, { "accession": "GCF_003438615.1", "gtdb_species": "s__Bacteroides sp003545565", "ani": 78.1155, "matched_fragments": 148, "total_fragments": 752, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004793475.1", "gtdb_species": "s__Bacteroides sp002491635", "ani": 77.9352, "matched_fragments": 146, "total_fragments": 752, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", 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