{
    "type": "genome",
    "identifier": "GCA_944322085.1",
    "organism": "Candidatus Bacteroides intestinavium",
    "title": "Candidatus Bacteroides intestinavium",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944322085.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110133981",
        "wgs_master": "CALUNT000000000.1",
        "refseq_category": "na",
        "taxid": "2838469",
        "species_taxid": "2838469",
        "organism_name": "Candidatus Bacteroides intestinavium",
        "infraspecific_name": "",
        "isolate": "BRZ_MR__bin79",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_MR__bin79",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/322/085/GCA_944322085.1_BRZ_MR_bin79",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Bacteroides intestinavium"
        ],
        "sample_taxid": [
            "2838469"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3342953",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "287105",
        "N50 (bp)": "148365",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.1",
        "Number of CDSs": "2762",
        "Average Protein Length": "347.8",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phocaeicola salanitronis",
                "strain": "strain=DSM 18170",
                "accession": "GCA_000190575.1",
                "taxid": 376805,
                "species_taxid": 376805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6054,
                "matched_fragments": 168,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides gallinarum",
                "strain": "strain=DSM 18171",
                "accession": "GCA_000374365.1",
                "taxid": 376806,
                "species_taxid": 376806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.851,
                "matched_fragments": 236,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola intestinalis",
                "strain": "strain=Sa1CVN1",
                "accession": "GCA_014837065.1",
                "taxid": 2762212,
                "species_taxid": 2762212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7729,
                "matched_fragments": 140,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides rodentium",
                "strain": "strain=JCM 16496",
                "accession": "GCA_000614125.1",
                "taxid": 691816,
                "species_taxid": 691816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8226,
                "matched_fragments": 246,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides muris",
                "strain": "strain=KH365_2",
                "accession": "GCA_024704915.1",
                "taxid": 2937417,
                "species_taxid": 2937417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6516,
                "matched_fragments": 212,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_025147485.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6076,
                "matched_fragments": 229,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=FDAARGOS_901",
                "accession": "GCA_016117815.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5765,
                "matched_fragments": 230,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=DSM 6597",
                "accession": "GCA_900107315.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5242,
                "matched_fragments": 235,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_000154205.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4711,
                "matched_fragments": 228,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fluxus",
                "strain": "strain=YIT 12057",
                "accession": "GCA_000195635.1",
                "taxid": 626930,
                "species_taxid": 626930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3351,
                "matched_fragments": 179,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3195,
                "matched_fragments": 220,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola plebeius",
                "strain": "strain=DSM 17135",
                "accession": "GCA_000187895.1",
                "taxid": 310297,
                "species_taxid": 310297,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.221,
                "matched_fragments": 101,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
                "strain": "strain=ATCC 43183",
                "accession": "GCA_000154525.1",
                "taxid": 46506,
                "species_taxid": 46506,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.2106,
                "matched_fragments": 188,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
                "strain": "strain=DSM 19555",
                "accession": "GCA_900106605.1",
                "taxid": 46506,
                "species_taxid": 46506,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1599,
                "matched_fragments": 188,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides clarus",
                "strain": "strain=YIT 12056",
                "accession": "GCA_000195615.1",
                "taxid": 626929,
                "species_taxid": 626929,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1575,
                "matched_fragments": 184,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
                "strain": "strain=ATCC 43183",
                "accession": "GCA_025147325.1",
                "taxid": 46506,
                "species_taxid": 46506,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1211,
                "matched_fragments": 190,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides oleiciplenus",
                "strain": "strain=YIT 12058",
                "accession": "GCA_000315485.1",
                "taxid": 626931,
                "species_taxid": 626931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0786,
                "matched_fragments": 155,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caccae",
                "strain": "strain=FDAARGOS_1097",
                "accession": "GCA_016726305.1",
                "taxid": 47678,
                "species_taxid": 47678,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0196,
                "matched_fragments": 78,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecicola",
                "strain": "strain=AGMB03916",
                "accession": "GCA_013618865.1",
                "taxid": 2739389,
                "species_taxid": 2739389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9846,
                "matched_fragments": 108,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola barnesiae",
                "strain": "strain=DSM 18169",
                "accession": "GCA_000374585.1",
                "taxid": 376804,
                "species_taxid": 376804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7675,
                "matched_fragments": 130,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_019118325.1",
                "gtdb_species": "s__Bacteroides intestinavium",
                "ani": 97.6054,
                "matched_fragments": 711,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018883785.1",
                "gtdb_species": "s__Bacteroides intestinipullorum",
                "ani": 86.6242,
                "matched_fragments": 527,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116285.1",
                "gtdb_species": "s__Bacteroides merdigallinarum",
                "ani": 85.3896,
                "matched_fragments": 578,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115825.1",
                "gtdb_species": "s__Bacteroides pullicola",
                "ani": 84.4902,
                "matched_fragments": 595,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116045.1",
                "gtdb_species": "s__Bacteroides merdipullorum",
                "ani": 82.2796,
                "matched_fragments": 391,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002160055.1",
                "gtdb_species": "s__Bacteroides avicola",
                "ani": 80.969,
                "matched_fragments": 506,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019116805.1",
                "gtdb_species": "s__Bacteroides merdavium",
                "ani": 79.9557,
                "matched_fragments": 290,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900128475.1",
                "gtdb_species": "s__Bacteroides massiliensis",
                "ani": 79.7055,
                "matched_fragments": 406,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.57",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900130135.1",
                "gtdb_species": "s__Bacteroides togonis",
                "ani": 78.9786,
                "matched_fragments": 316,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.34",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017471925.1",
                "gtdb_species": "s__Bacteroides sp017471925",
                "ani": 78.4285,
                "matched_fragments": 257,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017464815.1",
                "gtdb_species": "s__Phocaeicola_A sp017464815",
                "ani": 77.3157,
                "matched_fragments": 125,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.095,
        "growth_tmp": 36.666,
        "optimum_tmp": 36.026,
        "optimum_ph": 6.997,
        "genome_size": 4818468.536,
        "gc_content": 43.414,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides intestinavium"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Bacteroides",
        "intestinavium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides intestinavium",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Bacteroides",
        "Bacteroides",
        "intestinavium"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}