{ "type": "genome", "identifier": "GCA_944322175.1", "organism": "uncultured Coriobacteriaceae bacterium", "title": "uncultured Coriobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944322175.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110133924", "wgs_master": "CALUOB000000000.1", "refseq_category": "na", "taxid": "331632", "species_taxid": "331632", "organism_name": "uncultured Coriobacteriaceae bacterium", "infraspecific_name": "", "isolate": "BRZ_RS__bin111", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_RS__bin111", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/322/175/GCA_944322175.1_BRZ_RS_bin111", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Coriobacteriaceae bacterium" ], "sample_taxid": [ "331632" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.592 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 4.55, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2101323", "Number of Sequences": "167", "Longest Sequences (bp)": "141924", "N50 (bp)": "19573", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "1649", "Average Protein Length": "323.2", "Coding Ratio (%)": "76.1", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 80.2305, "matched_fragments": 233, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.7915, "matched_fragments": 281, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.5042, "matched_fragments": 215, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 79.4339, "matched_fragments": 221, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.061, "matched_fragments": 222, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 78.987, "matched_fragments": 219, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 78.9731, "matched_fragments": 202, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma massiliensis", "strain": "", "accession": "GCA_000311845.1", "taxid": 1472761, "species_taxid": 1472761, "relation_to_type": "type", "validated": true, "ani": 78.9725, "matched_fragments": 215, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma shizhengliae", "strain": "strain=HF-1365", "accession": "GCA_009676995.1", "taxid": 2606615, "species_taxid": 2606615, "relation_to_type": "type", "validated": true, "ani": 78.9072, "matched_fragments": 220, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella intestinalis", "strain": "strain=DSM 13280", "accession": "GCA_000156175.1", "taxid": 147207, "species_taxid": 147207, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8831, "matched_fragments": 174, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 78.6007, "matched_fragments": 170, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella vaginalis", "strain": "strain=Marseille-P2666", "accession": "GCA_900176655.1", "taxid": 1870987, "species_taxid": 1870987, "relation_to_type": "type", "validated": true, "ani": 78.5846, "matched_fragments": 178, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 78.5454, "matched_fragments": 172, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 78.4319, "matched_fragments": 175, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 78.3865, "matched_fragments": 169, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella tanakaei", "strain": "strain=YIT 12063", "accession": "GCA_000225705.1", "taxid": 626935, "species_taxid": 626935, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3259, "matched_fragments": 180, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 78.2645, "matched_fragments": 170, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 78.2179, "matched_fragments": 166, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 78.101, "matched_fragments": 171, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3315, "matched_fragments": 108, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3158, "matched_fragments": 107, "total_fragments": 617, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.07, "contamination": 4.55, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002159765.1", "gtdb_species": "s__Coprousia sp002159765", "ani": 80.2892, "matched_fragments": 264, "total_fragments": 617, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Coprousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000333815.1", "gtdb_species": "s__Enorma sp000333815", "ani": 80.2024, "matched_fragments": 234, "total_fragments": 617, "gtdb_taxonomy": 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