{ "type": "genome", "identifier": "GCA_944324125.1", "organism": "uncultured Limosilactobacillus sp.", "title": "uncultured Limosilactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944324125.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134628", "wgs_master": "CALUVD000000000.1", "refseq_category": "na", "taxid": "2837629", "species_taxid": "2837629", "organism_name": "uncultured Limosilactobacillus sp.", "infraspecific_name": "", "isolate": "E05__bin203", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "E05__bin203", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/324/125/GCA_944324125.1_E05_bin203", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Limosilactobacillus sp." ], "sample_taxid": [ "2837629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.491 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1713095", "Number of Sequences": "114", "Longest Sequences (bp)": "82939", "N50 (bp)": "25734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.3", "Number of CDSs": "1567", "Average Protein Length": "300.7", "Coding Ratio (%)": "82.5", "Number of rRNAs": "2", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus mucosae", "strain": "strain=DSM 13345", "accession": "GCA_001436025.1", "taxid": 97478, "species_taxid": 97478, "relation_to_type": "type", "validated": true, "ani": 87.5288, "matched_fragments": 464, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus pontis", "strain": "strain=DSM 8475", "accession": "GCA_001435345.1", "taxid": 35787, "species_taxid": 35787, "relation_to_type": "type", "validated": true, "ani": 77.6477, "matched_fragments": 66, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fastidiosus", "strain": "strain=WF-MO7-1", "accession": "GCA_014145505.1", "taxid": 2759855, "species_taxid": 2759855, "relation_to_type": "type", "validated": true, "ani": 77.262, "matched_fragments": 53, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=ATCC 14931", "accession": "GCA_000159215.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.1496, "matched_fragments": 71, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus gorillae", "strain": "strain=KZ01", "accession": "GCA_001293735.1", "taxid": 1450649, "species_taxid": 1450649, "relation_to_type": "type", "validated": true, "ani": 77.1374, "matched_fragments": 62, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=DSM 20052", "accession": "GCA_013394085.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.0999, "matched_fragments": 74, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=B1 28", "accession": "GCA_005341425.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.0858, "matched_fragments": 74, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus frumenti", "strain": "strain=DSM 13145", "accession": "GCA_001436045.1", "taxid": 104955, "species_taxid": 104955, "relation_to_type": "type", "validated": true, "ani": 76.9132, "matched_fragments": 63, "total_fragments": 518, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012843675.1", "gtdb_species": "s__Limosilactobacillus sp012843675", "ani": 97.6619, "matched_fragments": 488, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001436025.1", "gtdb_species": "s__Limosilactobacillus mucosae", "ani": 87.5288, "matched_fragments": 464, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCA_019114515.1", "gtdb_species": "s__Limosilactobacillus merdigallinarum", "ani": 77.9417, "matched_fragments": 52, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019117285.1", "gtdb_species": "s__Limosilactobacillus intestinigallinarum", "ani": 77.7587, "matched_fragments": 54, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001435345.1", "gtdb_species": "s__Limosilactobacillus pontis", "ani": 77.6477, "matched_fragments": 66, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016900115.1", "gtdb_species": "s__Limosilactobacillus alvi", "ani": 77.2939, "matched_fragments": 50, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "97.65", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014145505.1", "gtdb_species": "s__Limosilactobacillus fastidiosus", "ani": 77.1897, "matched_fragments": 52, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001293735.1", "gtdb_species": "s__Limosilactobacillus gorillae", "ani": 77.1374, "matched_fragments": 62, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013394085.1", "gtdb_species": "s__Limosilactobacillus fermentum", "ani": 77.0999, "matched_fragments": 74, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.65", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.60", "num_clustered_genomes": 102, "status": "-" }, { "accession": "GCF_009663775.1", "gtdb_species": "s__Limosilactobacillus sp009663775", "ani": 77.0297, "matched_fragments": 50, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001436045.1", "gtdb_species": "s__Limosilactobacillus frumenti", "ani": 76.9132, "matched_fragments": 63, "total_fragments": 518, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus sp012843675" ], "_genome_taxon": [ "uncultured", "Limosilactobacillus", "sp.", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus sp012843675", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Lactobacillaceae", "Limosilactobacillus", "Limosilactobacillus", "sp012843675" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }