{ "type": "genome", "identifier": "GCA_944324515.1", "organism": "Candidatus Desulfovibrio intestinipullorum", "title": "Candidatus Desulfovibrio intestinipullorum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944324515.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134509", "wgs_master": "CALUWR000000000.1", "refseq_category": "na", "taxid": "2838536", "species_taxid": "2838536", "organism_name": "Candidatus Desulfovibrio intestinipullorum", "infraspecific_name": "", "isolate": "BRZ_PP__bin50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_PP__bin50", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/324/515/GCA_944324515.1_BRZ_PP_bin50", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Desulfovibrio intestinipullorum" ], "sample_taxid": [ "2838536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.826 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2932861", "Number of Sequences": "68", "Longest Sequences (bp)": "230502", "N50 (bp)": "68347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "2341", "Average Protein Length": "333.0", "Coding Ratio (%)": "79.7", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2565, "matched_fragments": 244, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 77.1934, "matched_fragments": 198, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.1143, "matched_fragments": 85, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio legallii", "strain": "strain=H1T", "accession": "GCA_004309735.1", "taxid": 571438, "species_taxid": 571438, "relation_to_type": "type", "validated": true, "ani": 76.9268, "matched_fragments": 159, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 76.811, "matched_fragments": 98, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio intestinalis", "strain": "strain=DSM 11275", "accession": "GCA_014202345.1", "taxid": 58621, "species_taxid": 58621, "relation_to_type": "type", "validated": true, "ani": 76.772, "matched_fragments": 104, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio termitidis", "strain": "strain=HI1", "accession": "GCA_000504305.1", "taxid": 42252, "species_taxid": 42252, "relation_to_type": "type", "validated": true, "ani": 76.6757, "matched_fragments": 112, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 76.6661, "matched_fragments": 104, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.4632, "matched_fragments": 63, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.432, "matched_fragments": 64, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio tunisiensis", "strain": "strain=RB22", "accession": "GCA_022809775.1", "taxid": 463192, "species_taxid": 463192, "relation_to_type": "type", "validated": true, "ani": 76.3335, "matched_fragments": 55, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 76.1573, "matched_fragments": 79, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, "ani": 76.1231, "matched_fragments": 77, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfocurvibacter africanus subsp. africanus", "strain": "strain=DSM 2603", "accession": "GCA_000422545.1", "taxid": 1511600, "species_taxid": 873, "relation_to_type": "type", "validated": true, "ani": 76.0605, "matched_fragments": 59, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019113165.1", 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"GCF_012843875.1", "gtdb_species": "s__Desulfovibrio sp900556755", "ani": 78.4352, "matched_fragments": 224, "total_fragments": 943, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_002369295.1", "gtdb_species": "s__Desulfovibrio sp002369295", "ani": 78.4328, "matched_fragments": 204, "total_fragments": 943, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { 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