{ "type": "genome", "identifier": "GCA_944324555.1", "organism": "uncultured Desulfovibrio sp.", "title": "uncultured Desulfovibrio sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944324555.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134503", "wgs_master": "CALUWU000000000.1", "refseq_category": "na", "taxid": "167968", "species_taxid": "167968", "organism_name": "uncultured Desulfovibrio sp.", "infraspecific_name": "", "isolate": "E25__bin168", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "E25__bin168", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/324/555/GCA_944324555.1_E25_bin168", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Desulfovibrio sp." ], "sample_taxid": [ "167968" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.804 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.88, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2885542", "Number of Sequences": "192", "Longest Sequences (bp)": "70254", "N50 (bp)": "24611", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "2333", "Average Protein Length": "337.6", "Coding Ratio (%)": "81.9", "Number of rRNAs": "0", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 79.169, "matched_fragments": 326, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 78.5321, "matched_fragments": 310, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio legallii", "strain": "strain=H1T", "accession": "GCA_004309735.1", "taxid": 571438, "species_taxid": 571438, "relation_to_type": "type", "validated": true, "ani": 77.4473, "matched_fragments": 247, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio intestinalis", "strain": "strain=DSM 11275", "accession": "GCA_014202345.1", "taxid": 58621, "species_taxid": 58621, "relation_to_type": "type", "validated": true, "ani": 77.1858, "matched_fragments": 173, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 76.9721, "matched_fragments": 129, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 76.7399, "matched_fragments": 117, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio fructosivorans", "strain": "strain=JJ", "accession": "GCA_000179555.1", "taxid": 878, "species_taxid": 878, "relation_to_type": "type", "validated": true, "ani": 76.3811, "matched_fragments": 94, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium apsheronum", "strain": "strain=DSM 5918", "accession": "GCA_900114115.1", "taxid": 52560, "species_taxid": 52560, "relation_to_type": "type", "validated": true, "ani": 76.2208, "matched_fragments": 59, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio alcoholivorans", "strain": "strain=DSM 5433", "accession": "GCA_000702665.1", "taxid": 81406, "species_taxid": 81406, "relation_to_type": "type", "validated": true, "ani": 76.208, "matched_fragments": 116, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio subterraneus", "strain": "strain=HN2", "accession": "GCA_013340285.1", "taxid": 2718620, "species_taxid": 2718620, "relation_to_type": "type", "validated": true, "ani": 76.1538, "matched_fragments": 87, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio alkalitolerans", "strain": "strain=DSM 16529", "accession": "GCA_000422245.1", "taxid": 293256, "species_taxid": 293256, "relation_to_type": "type", "validated": true, "ani": 76.0996, "matched_fragments": 67, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium baculatum", "strain": "strain=DSM 4028", "accession": "GCA_000023225.1", "taxid": 899, "species_taxid": 899, "relation_to_type": "type", "validated": true, "ani": 75.9538, "matched_fragments": 66, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.88, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_019114565.1", "gtdb_species": "s__Desulfovibrio intestinigallinarum", "ani": 84.9956, "matched_fragments": 508, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905215675.1", "gtdb_species": "s__Desulfovibrio sp905215675", "ani": 84.9802, "matched_fragments": 453, "total_fragments": 866, "gtdb_taxonomy": 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"d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_019118345.1", "gtdb_species": "s__Desulfovibrio intestinavium", "ani": 79.1639, "matched_fragments": 306, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116045.1", "gtdb_species": "s__Desulfovibrio piger_A", "ani": 79.0667, "matched_fragments": 344, "total_fragments": 866, "gtdb_taxonomy": 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