{
    "type": "genome",
    "identifier": "GCA_944325995.1",
    "organism": "Limosilactobacillus vaginalis",
    "title": "Limosilactobacillus vaginalis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944325995.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110134629",
        "wgs_master": "CALVCD000000000.1",
        "refseq_category": "na",
        "taxid": "1633",
        "species_taxid": "1633",
        "organism_name": "Limosilactobacillus vaginalis",
        "infraspecific_name": "",
        "isolate": "BRZ_HP__bin55",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_HP__bin55",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "GCF_944325995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/325/995/GCA_944325995.1_BRZ_HP_bin55",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus vaginalis"
        ],
        "sample_taxid": [
            "1633"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.480 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1680030",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "390492",
        "N50 (bp)": "150187",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.6",
        "Number of CDSs": "1643",
        "Average Protein Length": "299.5",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Limosilactobacillus vaginalis",
                "strain": "strain=ATCC 49540",
                "accession": "GCA_000159435.1",
                "taxid": 1633,
                "species_taxid": 1633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.86,
                "matched_fragments": 489,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus vaginalis",
                "strain": "strain=DSM 5837",
                "accession": "GCA_001435915.1",
                "taxid": 1633,
                "species_taxid": 1633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.695,
                "matched_fragments": 447,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus portuensis",
                "strain": "strain=c11Ua_112_M",
                "accession": "GCA_014838735.1",
                "taxid": 2742601,
                "species_taxid": 2742601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.5531,
                "matched_fragments": 470,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus urinaemulieris",
                "strain": "strain=c9Ua_26_M",
                "accession": "GCA_014838745.1",
                "taxid": 2742600,
                "species_taxid": 2742600,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7017,
                "matched_fragments": 460,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus avistercoris",
                "strain": "strain=Sa3CUN2",
                "accession": "GCA_014836425.1",
                "taxid": 2762243,
                "species_taxid": 2762243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9114,
                "matched_fragments": 384,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus frumenti",
                "strain": "strain=DSM 13145",
                "accession": "GCA_001436045.1",
                "taxid": 104955,
                "species_taxid": 104955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5145,
                "matched_fragments": 194,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000159435.1",
                "gtdb_species": "s__Limosilactobacillus vaginalis",
                "ani": 98.86,
                "matched_fragments": 489,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "96.39",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014838735.1",
                "gtdb_species": "s__Limosilactobacillus portuensis",
                "ani": 91.5531,
                "matched_fragments": 470,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014838745.1",
                "gtdb_species": "s__Limosilactobacillus urinaemulieris",
                "ani": 90.7017,
                "matched_fragments": 460,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014836425.1",
                "gtdb_species": "s__Limosilactobacillus sp014836425",
                "ani": 83.9607,
                "matched_fragments": 382,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014145505.1",
                "gtdb_species": "s__Limosilactobacillus fastidiosus",
                "ani": 82.6286,
                "matched_fragments": 334,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018883805.1",
                "gtdb_species": "s__Limosilactobacillus merdavium",
                "ani": 82.0889,
                "matched_fragments": 283,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.07",
                "min_intra_species_ani": "96.07",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001436045.1",
                "gtdb_species": "s__Limosilactobacillus frumenti",
                "ani": 79.5145,
                "matched_fragments": 194,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019117445.1",
                "gtdb_species": "s__Limosilactobacillus excrementigallinarum",
                "ani": 78.318,
                "matched_fragments": 81,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus vaginalis"
    ],
    "_genome_taxon": [
        "Limosilactobacillus",
        "vaginalis",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus vaginalis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Limosilactobacillus",
        "Limosilactobacillus",
        "vaginalis"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}