{ "type": "genome", "identifier": "GCA_944326135.1", "organism": "uncultured Ligilactobacillus sp.", "title": "uncultured Ligilactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944326135.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134610", "wgs_master": "CALVCU000000000.1", "refseq_category": "na", "taxid": "2837633", "species_taxid": "2837633", "organism_name": "uncultured Ligilactobacillus sp.", "infraspecific_name": "", "isolate": "E04__bin353", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "E04__bin353", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/326/135/GCA_944326135.1_E04_bin353", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Ligilactobacillus sp." ], "sample_taxid": [ "2837633" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.423 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.68, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1522286", "Number of Sequences": "25", "Longest Sequences (bp)": "276578", "N50 (bp)": "86981", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.0", "Number of CDSs": "1526", "Average Protein Length": "296.8", "Coding Ratio (%)": "89.3", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ligilactobacillus aviarius", "strain": "strain=DSM 20655", "accession": "GCA_001436315.1", "taxid": 1606, "species_taxid": 1606, "relation_to_type": "type", "validated": true, "ani": 78.8833, "matched_fragments": 117, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus aviarius", "strain": "strain=NBRC 102162", "accession": "GCA_007989665.1", "taxid": 1606, "species_taxid": 1606, "relation_to_type": "type", "validated": true, "ani": 78.8162, "matched_fragments": 114, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus araffinosus", "strain": "strain=DSM 20653", "accession": "GCA_001435375.1", "taxid": 147809, "species_taxid": 147809, "relation_to_type": "type", "validated": true, "ani": 78.2554, "matched_fragments": 152, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus ceti", "strain": "strain=DSM 22408", "accession": "GCA_001438785.1", "taxid": 395085, "species_taxid": 395085, "relation_to_type": "type", "validated": true, "ani": 77.2849, "matched_fragments": 74, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus ceti", "strain": "strain=DSM 22408", "accession": "GCA_000423245.1", "taxid": 395085, "species_taxid": 395085, "relation_to_type": "type", "validated": true, "ani": 77.2294, "matched_fragments": 76, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus hayakitensis", "strain": "strain=JCM 14209", "accession": "GCA_000615845.1", "taxid": 396716, "species_taxid": 396716, "relation_to_type": "type", "validated": true, "ani": 77.1991, "matched_fragments": 96, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus hayakitensis", "strain": "strain=DSM 18933", "accession": "GCA_001434455.1", "taxid": 396716, "species_taxid": 396716, "relation_to_type": "type", "validated": true, "ani": 77.1919, "matched_fragments": 97, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=DSM 20554", "accession": "GCA_002079585.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 76.9372, "matched_fragments": 105, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=DSM 20555", "accession": "GCA_001435955.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 76.9131, "matched_fragments": 104, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ligilactobacillus salivarius", "strain": "strain=ATCC 11741", "accession": "GCA_000159395.1", "taxid": 1624, "species_taxid": 1624, "relation_to_type": "type", "validated": true, "ani": 76.9048, "matched_fragments": 106, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus apisilvae", "strain": "strain=SG5_A10", "accession": "GCA_023380225.1", "taxid": 2923364, "species_taxid": 2923364, "relation_to_type": "type", "validated": true, "ani": 75.8239, "matched_fragments": 50, "total_fragments": 494, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.68, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019114385.1", "gtdb_species": "s__Ligilactobacillus excrementigallinarum", "ani": 80.2614, "matched_fragments": 256, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001436315.1", "gtdb_species": "s__Ligilactobacillus aviarius", "ani": 78.9081, "matched_fragments": 118, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001654615.1", "gtdb_species": "s__Ligilactobacillus aviarius_B", "ani": 78.3796, "matched_fragments": 140, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "96.72", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_001435375.1", "gtdb_species": "s__Ligilactobacillus araffinosus", "ani": 78.2554, "matched_fragments": 152, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019120355.1", "gtdb_species": "s__Ligilactobacillus faecavium", "ani": 78.1454, "matched_fragments": 108, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423245.1", "gtdb_species": "s__Ligilactobacillus ceti", "ani": 77.2293, "matched_fragments": 76, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000615845.1", "gtdb_species": "s__Ligilactobacillus hayakitensis", "ani": 77.1991, "matched_fragments": 96, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905204935.1", "gtdb_species": "s__Ligilactobacillus sp900765635", "ani": 77.0459, "matched_fragments": 77, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001435955.1", "gtdb_species": "s__Ligilactobacillus salivarius", "ani": 76.9131, "matched_fragments": 104, "total_fragments": 494, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.79", "num_clustered_genomes": 193, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Ligilactobacillus", "s__Ligilactobacillus sp944326135" ], "_genome_taxon": [ "uncultured", "Ligilactobacillus", "sp.", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Ligilactobacillus", "s__Ligilactobacillus sp944326135", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Lactobacillaceae", "Ligilactobacillus", "Ligilactobacillus", "sp944326135" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }