{
    "type": "genome",
    "identifier": "GCA_944326185.1",
    "organism": "Enterococcus cecorum",
    "title": "Enterococcus cecorum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944326185.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110134603",
        "wgs_master": "CALVCZ000000000.1",
        "refseq_category": "na",
        "taxid": "44008",
        "species_taxid": "44008",
        "organism_name": "Enterococcus cecorum",
        "infraspecific_name": "",
        "isolate": "BRZ_PB__bin29",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_PB__bin29",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/326/185/GCA_944326185.1_BRZ_PB_bin29",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Enterococcus cecorum"
        ],
        "sample_taxid": [
            "44008"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.598 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2101350",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "110656",
        "N50 (bp)": "48114",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.5",
        "Number of CDSs": "2092",
        "Average Protein Length": "292.9",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Enterococcus cecorum",
                "strain": "strain=DSM 20682",
                "accession": "GCA_000379745.1",
                "taxid": 44008,
                "species_taxid": 44008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5847,
                "matched_fragments": 578,
                "total_fragments": 671,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus cecorum",
                "strain": "strain=ATCC 43198",
                "accession": "GCA_000407565.1",
                "taxid": 44008,
                "species_taxid": 44008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.555,
                "matched_fragments": 580,
                "total_fragments": 671,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus cecorum",
                "strain": "strain=ATCC 43198",
                "accession": "GCA_000492155.1",
                "taxid": 44008,
                "species_taxid": 44008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5434,
                "matched_fragments": 586,
                "total_fragments": 671,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus cecorum",
                "strain": "strain=NCTC12421",
                "accession": "GCA_900474605.1",
                "taxid": 44008,
                "species_taxid": 44008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5239,
                "matched_fragments": 581,
                "total_fragments": 671,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus cecorum",
                "strain": "strain=DSM 20682",
                "accession": "GCA_001885885.1",
                "taxid": 44008,
                "species_taxid": 44008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5152,
                "matched_fragments": 570,
                "total_fragments": 671,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000407565.1",
                "gtdb_species": "s__Enterococcus_E cecorum",
                "ani": 97.555,
                "matched_fragments": 580,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 49,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019120335.1",
                "gtdb_species": "s__Enterococcus_E stercoripullorum",
                "ani": 94.913,
                "matched_fragments": 530,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000406925.1",
                "gtdb_species": "s__Enterococcus_E columbae",
                "ani": 80.2657,
                "matched_fragments": 297,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_000271405.2",
                "gtdb_species": "s__Enterococcus_B hirae",
                "ani": 78.2332,
                "matched_fragments": 84,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 203,
                "status": "-"
            },
            {
                "accession": "GCF_009933335.1",
                "gtdb_species": "s__Enterococcus_F sp009933335",
                "ani": 78.2038,
                "matched_fragments": 117,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017316025.1",
                "gtdb_species": "s__Enterococcus_C sp017316025",
                "ani": 78.0443,
                "matched_fragments": 89,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017426705.1",
                "gtdb_species": "s__Enterococcus_F sp017426705",
                "ani": 77.9907,
                "matched_fragments": 145,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001886265.1",
                "gtdb_species": "s__Enterococcus_B thailandicus",
                "ani": 77.8349,
                "matched_fragments": 104,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001544255.1",
                "gtdb_species": "s__Enterococcus_B faecium",
                "ani": 77.7946,
                "matched_fragments": 73,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2177,
                "status": "-"
            },
            {
                "accession": "GCF_002140715.1",
                "gtdb_species": "s__Enterococcus sp002140715",
                "ani": 77.7903,
                "matched_fragments": 79,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001730365.1",
                "gtdb_species": "s__Enterococcus quebecensis",
                "ani": 77.6872,
                "matched_fragments": 79,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000392875.1",
                "gtdb_species": "s__Enterococcus faecalis",
                "ani": 77.6198,
                "matched_fragments": 98,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.66",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 1902,
                "status": "-"
            },
            {
                "accession": "GCF_007990225.1",
                "gtdb_species": "s__Enterococcus_B villorum",
                "ani": 77.5636,
                "matched_fragments": 87,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_002140915.1",
                "gtdb_species": "s__Enterococcus_D sp002140915",
                "ani": 77.5018,
                "matched_fragments": 91,
                "total_fragments": 671,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": -0.346,
        "growth_tmp": 35.0,
        "optimum_tmp": 34.173,
        "optimum_ph": 8.805,
        "genome_size": 2339601.588,
        "gc_content": 36.463,
        "coding_genes": 2297.0,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 68.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Enterococcaceae",
        "g__Enterococcus_E",
        "s__Enterococcus_E cecorum"
    ],
    "_genome_taxon": [
        "Enterococcus",
        "cecorum",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Enterococcaceae",
        "g__Enterococcus_E",
        "s__Enterococcus_E cecorum",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Enterococcaceae",
        "Enterococcus",
        "E",
        "Enterococcus",
        "E",
        "cecorum"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}