{ "type": "genome", "identifier": "GCA_944326205.1", "organism": "Candidatus Parabacteroides intestinavium", "title": "Candidatus Parabacteroides intestinavium", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944326205.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134187", "wgs_master": "CALVDB000000000.1", "refseq_category": "na", "taxid": "2838721", "species_taxid": "2838721", "organism_name": "Candidatus Parabacteroides intestinavium", "infraspecific_name": "", "isolate": "BRZ_GC__bin40", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_GC__bin40", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/326/205/GCA_944326205.1_BRZ_GC_bin40", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Parabacteroides intestinavium" ], "sample_taxid": [ "2838721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3165821", "Number of Sequences": "74", "Longest Sequences (bp)": "207571", "N50 (bp)": "72551", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "2545", "Average Protein Length": "366.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parabacteroides johnsonii", "strain": "strain=DSM 18315", "accession": "GCA_025151045.1", "taxid": 387661, "species_taxid": 387661, "relation_to_type": "type", "validated": true, "ani": 77.7287, "matched_fragments": 125, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides bouchesdurhonensis", "strain": "strain=Marseille-P3763", "accession": "GCA_900186615.1", "taxid": 1936995, "species_taxid": 1936995, "relation_to_type": "type", "validated": true, "ani": 77.5544, "matched_fragments": 109, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides acidifaciens", "strain": "strain=426_9", "accession": "GCA_014385205.1", "taxid": 2290935, "species_taxid": 2290935, "relation_to_type": "type", "validated": true, "ani": 77.5507, "matched_fragments": 130, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides acidifaciens", "strain": "strain=426-9", "accession": "GCA_003363715.1", "taxid": 2290935, "species_taxid": 2290935, "relation_to_type": "type", "validated": true, "ani": 77.5307, "matched_fragments": 130, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides timonensis", "strain": "strain=Marseille-P3236", "accession": "GCA_900128505.1", "taxid": 1871013, "species_taxid": 1871013, "relation_to_type": "type", "validated": true, "ani": 77.5296, "matched_fragments": 117, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides johnsonii", "strain": "strain=DSM 18315", "accession": "GCA_000156495.1", "taxid": 387661, "species_taxid": 387661, "relation_to_type": "type", "validated": true, "ani": 77.4779, "matched_fragments": 131, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides distasonis", "strain": "strain=FDAARGOS_1565", "accession": "GCA_020735945.1", "taxid": 823, "species_taxid": 823, "relation_to_type": "type", "validated": true, "ani": 77.3821, "matched_fragments": 131, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides distasonis", "strain": "strain=NCTC11152", "accession": "GCA_900445525.1", "taxid": 823, "species_taxid": 823, "relation_to_type": "type", "validated": true, "ani": 77.365, "matched_fragments": 133, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides distasonis", "strain": "strain=ATCC 8503", "accession": "GCA_000012845.1", "taxid": 823, "species_taxid": 823, "relation_to_type": "type", "validated": true, "ani": 77.2805, "matched_fragments": 128, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=NCTC13052", "accession": "GCA_900445495.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 77.2376, "matched_fragments": 136, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=ATCC 43184", "accession": "GCA_000154105.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 77.2126, "matched_fragments": 134, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=ATCC 43184", "accession": "GCA_025151215.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 77.1596, "matched_fragments": 133, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola massiliensis", "strain": "strain=DSM 17679", "accession": "GCA_000373085.1", "taxid": 204516, "species_taxid": 204516, "relation_to_type": "type", "validated": true, "ani": 77.1386, "matched_fragments": 59, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides goldsteinii", "strain": "strain=DSM 19448", "accession": "GCA_000969835.1", "taxid": 328812, "species_taxid": 328812, "relation_to_type": "type", "validated": true, "ani": 77.0507, "matched_fragments": 136, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola massiliensis", "strain": "strain=DSM 17679", "accession": "GCA_000382445.1", "taxid": 204516, "species_taxid": 204516, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0383, "matched_fragments": 61, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola dorei", "strain": "strain=DSM 17855", "accession": "GCA_025146415.1", "taxid": 357276, "species_taxid": 357276, "relation_to_type": "type", "validated": true, "ani": 77.0339, "matched_fragments": 65, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola coprophilus", "strain": "strain=JCM 13818", "accession": "GCA_001315785.1", "taxid": 387090, "species_taxid": 387090, "relation_to_type": "type", "validated": true, "ani": 76.9567, "matched_fragments": 65, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola faecicola", "strain": "strain=AGMB03916", "accession": "GCA_013618865.1", "taxid": 2739389, "species_taxid": 2739389, "relation_to_type": "type", "validated": true, "ani": 76.8215, "matched_fragments": 68, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola coprophilus", "strain": "strain=DSM 18228", "accession": "GCA_000157915.1", "taxid": 387090, "species_taxid": 387090, "relation_to_type": "type", "validated": true, "ani": 76.8018, "matched_fragments": 72, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides xylanisolvens", "strain": "strain=XB1A", "accession": "GCA_000210075.1", "taxid": 371601, "species_taxid": 371601, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8004, "matched_fragments": 60, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides muris", "strain": "strain=KH365_2", "accession": "GCA_024704915.1", "taxid": 2937417, "species_taxid": 2937417, "relation_to_type": "type", "validated": true, "ani": 76.7234, "matched_fragments": 55, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caecimuris", "strain": "strain=I48", "accession": "GCA_002221665.1", "taxid": 1796613, "species_taxid": 1796613, "relation_to_type": "type", "validated": true, "ani": 76.5933, "matched_fragments": 62, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5842, "matched_fragments": 51, "total_fragments": 1019, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caecimuris", "strain": "strain=I48", "accession": "GCA_016697125.1", "taxid": 1796613, "species_taxid": 1796613, "relation_to_type": "type", "validated": true, "ani": 76.5589, "matched_fragments": 61, "total_fragments": 1019, 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