{
    "type": "genome",
    "identifier": "GCA_944326745.1",
    "organism": "Ligilactobacillus salivarius",
    "title": "Ligilactobacillus salivarius",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944326745.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110134617",
        "wgs_master": "CALVFD000000000.1",
        "refseq_category": "na",
        "taxid": "1624",
        "species_taxid": "1624",
        "organism_name": "Ligilactobacillus salivarius",
        "infraspecific_name": "",
        "isolate": "BRZ_GP__bin16",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_GP__bin16",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/326/745/GCA_944326745.1_BRZ_GP_bin16",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ligilactobacillus salivarius"
        ],
        "sample_taxid": [
            "1624"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.500 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1785460",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "340824",
        "N50 (bp)": "89521",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.5",
        "Number of CDSs": "1729",
        "Average Protein Length": "302.1",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Ligilactobacillus salivarius",
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                "species_taxid": 1624,
                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus salivarius",
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                "relation_to_type": "type",
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                "status": "conclusive"
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            {
                "organism_name": "Ligilactobacillus salivarius",
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                "ani": 97.2386,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus hayakitensis",
                "strain": "strain=JCM 14209",
                "accession": "GCA_000615845.1",
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                "species_taxid": 396716,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus hayakitensis",
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                "accession": "GCA_001434455.1",
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                "species_taxid": 396716,
                "relation_to_type": "type",
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            },
            {
                "organism_name": "Ligilactobacillus murinus",
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                "accession": "GCA_001436015.1",
                "taxid": 1622,
                "species_taxid": 1622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3837,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus murinus",
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                "accession": "GCA_001591685.1",
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                "species_taxid": 1622,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 80,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Liquorilactobacillus oeni",
                "strain": "strain=DSM 19972",
                "accession": "GCA_001436275.1",
                "taxid": 303241,
                "species_taxid": 303241,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 54,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_001435955.1",
                "gtdb_species": "s__Ligilactobacillus salivarius",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
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                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.07",
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                "num_clustered_genomes": 193,
                "status": "conclusive"
            },
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                "mean_intra_species_ani": "99.97",
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                "num_clustered_genomes": 2,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
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                "status": "-"
            },
            {
                "accession": "GCA_905204935.1",
                "gtdb_species": "s__Ligilactobacillus sp900765635",
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                "matched_fragments": 98,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
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            {
                "accession": "GCF_900110005.1",
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                "accession": "GCF_001434405.1",
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
        "doubling_h": null,
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        "genome_size": null,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
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        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Ligilactobacillus",
        "s__Ligilactobacillus salivarius"
    ],
    "_genome_taxon": [
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        "salivarius",
        "d__Bacteria",
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        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Ligilactobacillus",
        "s__Ligilactobacillus salivarius",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Ligilactobacillus",
        "Ligilactobacillus",
        "salivarius"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}