{ "type": "genome", "identifier": "GCA_944326985.1", "organism": "Limosilactobacillus ingluviei", "title": "Limosilactobacillus ingluviei", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944326985.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110134623", "wgs_master": "CALVFZ000000000.1", "refseq_category": "na", "taxid": "148604", "species_taxid": "148604", "organism_name": "Limosilactobacillus ingluviei", "infraspecific_name": "", "isolate": "BRZ_II__bin91", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_II__bin91", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "GCF_944326985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/326/985/GCA_944326985.1_BRZ_II_bin91", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Limosilactobacillus ingluviei" ], "sample_taxid": [ "148604" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.528 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence 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"below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=DSM 20052", "accession": "GCA_013394085.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.9917, "matched_fragments": 140, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=B1 28", "accession": "GCA_005341425.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.9798, "matched_fragments": 135, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=ATCC 14931", "accession": "GCA_000159215.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.937, "matched_fragments": 137, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_000160835.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 77.9319, "matched_fragments": 77, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus gorillae", "strain": "strain=KZ01", "accession": "GCA_001293735.1", "taxid": 1450649, "species_taxid": 1450649, "relation_to_type": "type", "validated": true, "ani": 77.929, "matched_fragments": 85, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_001435475.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 77.8077, "matched_fragments": 74, "total_fragments": 587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus mucosae", "strain": "strain=DSM 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"mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.81", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_019118465.1", "gtdb_species": "s__Limosilactobacillus faecipullorum", "ani": 79.2583, "matched_fragments": 149, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016900115.1", "gtdb_species": "s__Limosilactobacillus alvi", "ani": 78.9904, "matched_fragments": 160, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "97.32", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.60", "num_clustered_genomes": 102, "status": "-" }, { "accession": "GCF_000160835.1", "gtdb_species": "s__Limosilactobacillus antri", "ani": 77.9042, "matched_fragments": 76, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001293735.1", "gtdb_species": "s__Limosilactobacillus gorillae", "ani": 77.8884, "matched_fragments": 86, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus ingluviei" ], "_genome_taxon": [ 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