{ "type": "genome", "identifier": "GCA_944376485.1", "organism": "Candidatus Mediterraneibacter pullicola", "title": "Candidatus Mediterraneibacter pullicola", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944376485.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135445", "wgs_master": "CALWCV000000000.1", "refseq_category": "na", "taxid": "2838682", "species_taxid": "2838682", "organism_name": "Candidatus Mediterraneibacter pullicola", "infraspecific_name": "", "isolate": "BRZ_NV__bin32", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_NV__bin32", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/376/485/GCA_944376485.1_BRZ_NV_bin32", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Mediterraneibacter pullicola" ], "sample_taxid": [ "2838682" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.640 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.52, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2225772", "Number of Sequences": "53", "Longest Sequences (bp)": "199375", "N50 (bp)": "75184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.8", "Number of CDSs": "2064", "Average Protein Length": "318.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 78.5093, "matched_fragments": 246, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 77.9453, "matched_fragments": 168, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.5895, "matched_fragments": 130, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.5627, "matched_fragments": 130, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 77.201, "matched_fragments": 121, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_000154065.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 76.7364, "matched_fragments": 65, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 76.6644, "matched_fragments": 66, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5143, "matched_fragments": 65, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", 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168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 76.0119, "matched_fragments": 50, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.52, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019117065.1", "gtdb_species": "s__Mediterraneibacter pullicola", "ani": 99.5999, "matched_fragments": 657, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_904418845.1", "gtdb_species": "s__Mediterraneibacter sp904418845", "ani": 81.8928, "matched_fragments": 474, "total_fragments": 718, "gtdb_taxonomy": 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