{
    "type": "genome",
    "identifier": "GCA_944376695.1",
    "organism": "uncultured Mediterraneibacter sp.",
    "title": "uncultured Mediterraneibacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944376695.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110135413",
        "wgs_master": "CALWDM000000000.1",
        "refseq_category": "na",
        "taxid": "2316024",
        "species_taxid": "2316024",
        "organism_name": "uncultured Mediterraneibacter sp.",
        "infraspecific_name": "",
        "isolate": "BRZ_CK__bin19",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_CK__bin19",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/376/695/GCA_944376695.1_BRZ_CK_bin19",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Mediterraneibacter sp."
        ],
        "sample_taxid": [
            "2316024"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.764 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2666450",
        "Number of Sequences": "103",
        "Longest Sequences (bp)": "178172",
        "N50 (bp)": "41557",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.3",
        "Number of CDSs": "2419",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mediterraneibacter catenae",
                "strain": "strain=SW178",
                "accession": "GCA_008691045.1",
                "taxid": 2594882,
                "species_taxid": 2594882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1169,
                "matched_fragments": 316,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] torques",
                "strain": "strain=ATCC 27756",
                "accession": "GCA_000153925.1",
                "taxid": 33039,
                "species_taxid": 33039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7607,
                "matched_fragments": 155,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4714,
                "matched_fragments": 137,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4332,
                "matched_fragments": 138,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3584,
                "matched_fragments": 137,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_008281175.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2884,
                "matched_fragments": 89,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_000156515.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2563,
                "matched_fragments": 88,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaedlerella arabinosiphila",
                "strain": "strain=DSM 106076",
                "accession": "GCA_003885045.1",
                "taxid": 2044587,
                "species_taxid": 2044587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2206,
                "matched_fragments": 158,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1759,
                "matched_fragments": 132,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1678,
                "matched_fragments": 135,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus comes",
                "strain": "strain=ATCC 27758",
                "accession": "GCA_025149785.1",
                "taxid": 410072,
                "species_taxid": 410072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1545,
                "matched_fragments": 67,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.146,
                "matched_fragments": 132,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilistercora timonensis",
                "strain": "strain=Marseille-P3756",
                "accession": "GCA_900312975.1",
                "taxid": 2086584,
                "species_taxid": 2086584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1388,
                "matched_fragments": 122,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.097,
                "matched_fragments": 135,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporofaciens musculi",
                "strain": "strain=WCA-9-b2",
                "accession": "GCA_009830285.1",
                "taxid": 2681861,
                "species_taxid": 2681861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7089,
                "matched_fragments": 62,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricomes intestini",
                "strain": "strain=DSM 29489",
                "accession": "GCA_004346165.1",
                "taxid": 1796634,
                "species_taxid": 1796634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.694,
                "matched_fragments": 77,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_000154365.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0979,
                "matched_fragments": 52,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster bolteae",
                "strain": "strain=ATCC BAA-613",
                "accession": "GCA_002959675.1",
                "taxid": 208479,
                "species_taxid": 208479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0661,
                "matched_fragments": 53,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002161355.1",
                "gtdb_species": "s__Mediterraneibacter caccavium",
                "ani": 90.808,
                "matched_fragments": 637,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_019120595.1",
                "gtdb_species": "s__Mediterraneibacter tabaqchaliae",
                "ani": 89.8819,
                "matched_fragments": 515,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900555215.1",
                "gtdb_species": "s__Mediterraneibacter excrementipullorum",
                "ani": 85.4077,
                "matched_fragments": 315,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.77",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_019118665.1",
                "gtdb_species": "s__Mediterraneibacter intestinipullorum",
                "ani": 82.1063,
                "matched_fragments": 439,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019116185.1",
                "gtdb_species": "s__Mediterraneibacter stercorigallinarum",
                "ani": 81.4835,
                "matched_fragments": 378,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019119995.1",
                "gtdb_species": "s__Mediterraneibacter faecavium",
                "ani": 79.7742,
                "matched_fragments": 330,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019118885.1",
                "gtdb_species": "s__Mediterraneibacter surreyensis",
                "ani": 79.6446,
                "matched_fragments": 288,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019120575.1",
                "gtdb_species": "s__Mediterraneibacter quadrami",
                "ani": 79.3322,
                "matched_fragments": 299,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019118545.1",
                "gtdb_species": "s__Mediterraneibacter merdavium",
                "ani": 79.2916,
                "matched_fragments": 313,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_904418845.1",
                "gtdb_species": "s__Mediterraneibacter sp904418845",
                "ani": 79.2885,
                "matched_fragments": 316,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117125.1",
                "gtdb_species": "s__Mediterraneibacter merdipullorum",
                "ani": 78.7894,
                "matched_fragments": 276,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019120075.1",
                "gtdb_species": "s__Mediterraneibacter excrementigallinarum_A",
                "ani": 78.4797,
                "matched_fragments": 262,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019120615.1",
                "gtdb_species": "s__Mediterraneibacter norfolkensis",
                "ani": 78.3782,
                "matched_fragments": 262,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Mediterraneibacter",
        "s__Mediterraneibacter sp944376695"
    ],
    "_genome_taxon": [
        "uncultured",
        "Mediterraneibacter",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Mediterraneibacter",
        "s__Mediterraneibacter sp944376695",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Mediterraneibacter",
        "Mediterraneibacter",
        "sp944376695"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}