{ "type": "genome", "identifier": "GCA_944383635.1", "organism": "Mediterraneibacter glycyrrhizinilyticus", "title": "Mediterraneibacter glycyrrhizinilyticus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944383635.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135437", "wgs_master": "CALWQL000000000.1", "refseq_category": "na", "taxid": "342942", "species_taxid": "342942", "organism_name": "Mediterraneibacter glycyrrhizinilyticus", "infraspecific_name": "", "isolate": "BRZ_LV__bin88", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_LV__bin88", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/383/635/GCA_944383635.1_BRZ_LV_bin88", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Mediterraneibacter glycyrrhizinilyticus" ], "sample_taxid": [ "342942" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.868 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3021045", "Number of Sequences": "402", "Longest Sequences (bp)": "61150", "N50 (bp)": "9063", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.2", "Number of CDSs": "2567", "Average Protein Length": "296.5", "Coding Ratio (%)": "75.6", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 77.7729, "matched_fragments": 240, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 76.978, "matched_fragments": 110, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 76.9727, "matched_fragments": 107, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9706, "matched_fragments": 101, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9695, "matched_fragments": 100, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9646, "matched_fragments": 99, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 76.616, "matched_fragments": 87, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 76.5617, "matched_fragments": 114, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 76.5361, "matched_fragments": 89, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicatena faecalis", "strain": "strain=AGMB00832", "accession": "GCA_012524165.2", "taxid": 2726362, "species_taxid": 2726362, "relation_to_type": "type", "validated": true, "ani": 76.494, "matched_fragments": 89, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016902345.1", "gtdb_species": "s__Mediterraneibacter glycyrrhizinilyticus_A", "ani": 96.2007, "matched_fragments": 642, "total_fragments": 799, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_904419285.1", "gtdb_species": "s__Mediterraneibacter caccogallinarum", "ani": 79.1335, "matched_fragments": 348, "total_fragments": 799, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_019115385.1", "gtdb_species": "s__Mediterraneibacter avicola", "ani": 77.7158, "matched_fragments": 184, "total_fragments": 799, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", 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"o__Lachnospirales", "f__Lachnospiraceae", "g__Mediterraneibacter", "s__Mediterraneibacter glycyrrhizinilyticus_A" ], "_genome_taxon": [ "Mediterraneibacter", "glycyrrhizinilyticus", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Mediterraneibacter", "s__Mediterraneibacter glycyrrhizinilyticus_A", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Mediterraneibacter", "Mediterraneibacter", "glycyrrhizinilyticus", "A" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }