{ "type": "genome", "identifier": "GCA_944383655.1", "organism": "Candidatus Mediterraneibacter stercoripullorum", "title": "Candidatus Mediterraneibacter stercoripullorum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944383655.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135454", "wgs_master": "CALWQK000000000.1", "refseq_category": "na", "taxid": "2838687", "species_taxid": "2838687", "organism_name": "Candidatus Mediterraneibacter stercoripullorum", "infraspecific_name": "", "isolate": "BRZ_MP__bin4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_MP__bin4", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/383/655/GCA_944383655.1_BRZ_MP_bin4", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Mediterraneibacter stercoripullorum" ], "sample_taxid": [ "2838687" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.719 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2497784", "Number of Sequences": "297", "Longest Sequences (bp)": "45476", "N50 (bp)": "11293", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.4", "Number of CDSs": "2037", "Average Protein Length": "331.0", "Coding Ratio (%)": "81.0", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 78.9276, "matched_fragments": 247, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 78.009, "matched_fragments": 165, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.9814, "matched_fragments": 164, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 77.8394, "matched_fragments": 116, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5627, "matched_fragments": 144, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.517, "matched_fragments": 145, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5157, "matched_fragments": 149, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 77.4971, "matched_fragments": 147, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 77.3125, "matched_fragments": 99, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicatena faecalis", "strain": "strain=AGMB00832", "accession": "GCA_012524165.2", "taxid": 2726362, "species_taxid": 2726362, "relation_to_type": "type", "validated": true, "ani": 77.2546, "matched_fragments": 128, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 77.2505, "matched_fragments": 92, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 77.2006, "matched_fragments": 118, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricomes intestini", "strain": "strain=DSM 29489", "accession": "GCA_004346165.1", "taxid": 1796634, "species_taxid": 1796634, "relation_to_type": "type", "validated": true, "ani": 76.9494, "matched_fragments": 71, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hespellia stercorisuis", "strain": "strain=DSM 15480", "accession": "GCA_900142165.1", "taxid": 180311, "species_taxid": 180311, "relation_to_type": "type", "validated": true, "ani": 76.9445, "matched_fragments": 80, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bariatricus massiliensis", "strain": "strain=AT12", "accession": "GCA_900086725.1", "taxid": 1745713, "species_taxid": 1745713, "relation_to_type": "type", "validated": true, "ani": 76.8906, "matched_fragments": 56, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 76.7716, "matched_fragments": 81, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_008281175.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", "validated": true, "ani": 76.6326, "matched_fragments": 54, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_000156515.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", "validated": true, "ani": 76.6074, "matched_fragments": 55, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_004295125.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 76.576, "matched_fragments": 78, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_000154505.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5556, "matched_fragments": 75, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sellimonas intestinalis", "strain": "strain=BR72", "accession": "GCA_001280875.1", "taxid": 1653434, "species_taxid": 1653434, "relation_to_type": "type", "validated": true, "ani": 76.5141, "matched_fragments": 71, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4825, "matched_fragments": 54, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019115765.1", "gtdb_species": "s__Mediterraneibacter stercoripullorum", "ani": 99.0426, "matched_fragments": 620, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_900751785.1", "gtdb_species": "s__Mediterraneibacter faecigallinarum", "ani": 79.1045, "matched_fragments": 261, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002160525.1", "gtdb_species": "s__Mediterraneibacter cottocaccae", "ani": 79.0524, "matched_fragments": 305, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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"optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Mediterraneibacter", "s__Mediterraneibacter stercoripullorum" ], "_genome_taxon": [ "Candidatus", "Mediterraneibacter", "stercoripullorum", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Mediterraneibacter", "s__Mediterraneibacter stercoripullorum", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Mediterraneibacter", "Mediterraneibacter", "stercoripullorum" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }