{
    "type": "genome",
    "identifier": "GCA_944384215.1",
    "organism": "uncultured Clostridia bacterium",
    "title": "uncultured Clostridia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944384215.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110135283",
        "wgs_master": "CALWSN000000000.1",
        "refseq_category": "na",
        "taxid": "244328",
        "species_taxid": "244328",
        "organism_name": "uncultured Clostridia bacterium",
        "infraspecific_name": "",
        "isolate": "E16__bin148",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "E16__bin148",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/384/215/GCA_944384215.1_E16_bin148",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Clostridia bacterium"
        ],
        "sample_taxid": [
            "244328"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.515 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 5.56,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1915325",
        "Number of Sequences": "157",
        "Longest Sequences (bp)": "63848",
        "N50 (bp)": "20937",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.3",
        "Number of CDSs": "1732",
        "Average Protein Length": "297.3",
        "Coding Ratio (%)": "80.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "[Clostridium] colinum",
                "strain": "strain=DSM 6011",
                "accession": "GCA_940677205.1",
                "taxid": 36835,
                "species_taxid": 36835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3474,
                "matched_fragments": 407,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium fallax",
                "strain": "strain=DSM 2631",
                "accession": "GCA_900129365.1",
                "taxid": 1533,
                "species_taxid": 1533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8428,
                "matched_fragments": 73,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium fallax",
                "strain": "strain=NCTC8380",
                "accession": "GCA_900461065.1",
                "taxid": 1533,
                "species_taxid": 1533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8325,
                "matched_fragments": 75,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tetani",
                "strain": "strain=ATCC 19406",
                "accession": "GCA_900167265.1",
                "taxid": 1513,
                "species_taxid": 1513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7635,
                "matched_fragments": 57,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tetani",
                "strain": "strain=ATCC 19406",
                "accession": "GCA_000762305.1",
                "taxid": 1513,
                "species_taxid": 1513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7592,
                "matched_fragments": 58,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium magnum",
                "strain": "strain=DSM 2767",
                "accession": "GCA_001623875.1",
                "taxid": 33954,
                "species_taxid": 33954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6485,
                "matched_fragments": 50,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium magnum",
                "strain": "strain=DSM 2767",
                "accession": "GCA_900129955.1",
                "taxid": 33954,
                "species_taxid": 33954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6421,
                "matched_fragments": 50,
                "total_fragments": 561,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.67,
            "contamination": 5.56,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018371275.1",
                "gtdb_species": "s__JAHALF01 sp018371275",
                "ani": 85.8356,
                "matched_fragments": 435,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__CAG-274;g__JAHALF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000364165.1",
                "gtdb_species": "s__Coprocola sp000364165",
                "ani": 75.229,
                "matched_fragments": 58,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Coprocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002161055.1",
                "gtdb_species": "s__Fimicola cottocaccae",
                "ani": 75.1993,
                "matched_fragments": 54,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Anaerotignaceae;g__Fimicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900091705.1",
                "gtdb_species": "s__Clostridium_P mediterraneense",
                "ani": 74.8316,
                "matched_fragments": 64,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004353185.1",
                "gtdb_species": "s__Clostridium cuniculi",
                "ani": 74.7855,
                "matched_fragments": 78,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900167265.1",
                "gtdb_species": "s__Clostridium_G tetani",
                "ani": 74.7635,
                "matched_fragments": 57,
                "total_fragments": 561,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_G",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 43,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__CAG-274",
        "g__Tyzzerella",
        "s__Tyzzerella sp944384215"
    ],
    "_genome_taxon": [
        "uncultured",
        "Clostridia",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__CAG-274",
        "g__Tyzzerella",
        "s__Tyzzerella sp944384215",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "CAG-274",
        "Tyzzerella",
        "Tyzzerella",
        "sp944384215"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}