{
    "type": "genome",
    "identifier": "GCA_944384765.1",
    "organism": "uncultured Agathobaculum sp.",
    "title": "uncultured Agathobaculum sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944384765.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110135602",
        "wgs_master": "CALWUM000000000.1",
        "refseq_category": "na",
        "taxid": "2048140",
        "species_taxid": "2048140",
        "organism_name": "uncultured Agathobaculum sp.",
        "infraspecific_name": "",
        "isolate": "BRZ_HT__bin4",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_HT__bin4",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/384/765/GCA_944384765.1_BRZ_HT_bin4",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Agathobaculum sp."
        ],
        "sample_taxid": [
            "2048140"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.647 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2286539",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "296097",
        "N50 (bp)": "68976",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "2186",
        "Average Protein Length": "303.4",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Agathobaculum desmolans",
                "strain": "strain=ATCC 43058",
                "accession": "GCA_000701665.1",
                "taxid": 39484,
                "species_taxid": 39484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6794,
                "matched_fragments": 376,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_016586375.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3249,
                "matched_fragments": 362,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_014648015.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2896,
                "matched_fragments": 366,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacillus massiliensis",
                "strain": "strain=type strain: Marseille-P3216",
                "accession": "GCA_900155735.1",
                "taxid": 1871029,
                "species_taxid": 1871029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3013,
                "matched_fragments": 244,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus pullicaecorum",
                "strain": "strain=DSM 23266",
                "accession": "GCA_900167005.1",
                "taxid": 501571,
                "species_taxid": 501571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.938,
                "matched_fragments": 173,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900555465.1",
                "gtdb_species": "s__Agathobaculum intestinigallinarum",
                "ani": 85.6308,
                "matched_fragments": 319,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019114345.1",
                "gtdb_species": "s__Agathobaculum pullistercoris",
                "ani": 85.451,
                "matched_fragments": 452,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_019113065.1",
                "gtdb_species": "s__Agathobaculum stercoravium",
                "ani": 85.3017,
                "matched_fragments": 426,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900557315.1",
                "gtdb_species": "s__Agathobaculum sp900557315",
                "ani": 84.2069,
                "matched_fragments": 298,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019115425.1",
                "gtdb_species": "s__Agathobaculum merdigallinarum",
                "ani": 84.0635,
                "matched_fragments": 373,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900625105.1",
                "gtdb_species": "s__Agathobaculum sp900625105",
                "ani": 83.3909,
                "matched_fragments": 467,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115615.1",
                "gtdb_species": "s__Agathobaculum merdavium",
                "ani": 82.5049,
                "matched_fragments": 375,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117485.1",
                "gtdb_species": "s__Agathobaculum intestinipullorum",
                "ani": 82.0952,
                "matched_fragments": 382,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115185.1",
                "gtdb_species": "s__Agathobaculum merdipullorum",
                "ani": 82.0023,
                "matched_fragments": 345,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900291975.1",
                "gtdb_species": "s__Agathobaculum sp900291975",
                "ani": 81.3176,
                "matched_fragments": 437,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2730994.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__Agathobaculum sp944384765"
    ],
    "_genome_taxon": [
        "uncultured",
        "Agathobaculum",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__Agathobaculum sp944384765",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Butyricicoccaceae",
        "Agathobaculum",
        "Agathobaculum",
        "sp944384765"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}