{ "type": "genome", "identifier": "GCA_944385075.1", "organism": "uncultured Oscillospiraceae bacterium", "title": "uncultured Oscillospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944385075.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135777", "wgs_master": "CALWVW000000000.1", "refseq_category": "na", "taxid": "707003", "species_taxid": "707003", "organism_name": "uncultured Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "BRZ_EG__bin109", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_EG__bin109", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/385/075/GCA_944385075.1_BRZ_EG_bin109", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oscillospiraceae bacterium" ], "sample_taxid": [ "707003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.508 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 47.35, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1825115", "Number of Sequences": "168", "Longest Sequences (bp)": "77611", "N50 (bp)": "15401", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "1635", "Average Protein Length": "296.2", "Coding Ratio (%)": "79.6", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium phoceensis", "strain": "strain=GD3", "accession": "GCA_001244495.1", "taxid": 1650661, "species_taxid": 1650661, "relation_to_type": "type", "validated": true, "ani": 80.8975, "matched_fragments": 287, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8863, "matched_fragments": 206, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=JCM 32125", "accession": "GCA_010508875.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8637, "matched_fragments": 215, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", "taxid": 2779352, "species_taxid": 2779352, "relation_to_type": "type", "validated": true, "ani": 78.7502, "matched_fragments": 202, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 78.5595, "matched_fragments": 138, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 77.5712, "matched_fragments": 141, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vescimonas fastidiosa", "strain": "strain=MM35", "accession": "GCA_018326305.1", "taxid": 2714353, "species_taxid": 2714353, "relation_to_type": "type", "validated": true, "ani": 77.0099, "matched_fragments": 65, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillibacter faecalis", "strain": "strain=MM59", "accession": "GCA_018408705.1", "taxid": 2714358, "species_taxid": 2714358, "relation_to_type": "type", "validated": true, "ani": 77.0087, "matched_fragments": 55, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 47.35, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002160305.1", "gtdb_species": "s__Lawsonibacter pullicola", "ani": 82.7118, "matched_fragments": 345, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.75", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_016899775.1", "gtdb_species": "s__Lawsonibacter sp900545895", "ani": 82.3215, "matched_fragments": 339, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_904420465.1", "gtdb_species": "s__Lawsonibacter sp904420465", "ani": 82.1164, "matched_fragments": 299, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585815.1", "gtdb_species": "s__Lawsonibacter sp910585815", "ani": 81.8386, "matched_fragments": 322, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900550705.1", "gtdb_species": "s__Lawsonibacter sp900550705", "ani": 81.6601, "matched_fragments": 238, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000492175.1", "gtdb_species": "s__Lawsonibacter sp000492175", "ani": 81.5387, "matched_fragments": 318, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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79.6018, "matched_fragments": 228, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159175.1", "gtdb_species": "s__An92 sp002159175", "ani": 79.411, "matched_fragments": 241, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__An92", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019117605.1", "gtdb_species": "s__Intestinimonas stercoravium", "ani": 79.3892, "matched_fragments": 207, "total_fragments": 523, 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"gc_content": 49.895, "coding_genes": 4347.333, "rRNA16S_genes": 3.0, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Lawsonibacter", "s__Lawsonibacter sp944385075" ], "_genome_taxon": [ "uncultured", "Oscillospiraceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Lawsonibacter", "s__Lawsonibacter sp944385075", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Lawsonibacter", "Lawsonibacter", "sp944385075" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }