{ "type": "genome", "identifier": "GCA_944385355.1", "organism": "uncultured Oscillospiraceae bacterium", "title": "uncultured Oscillospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944385355.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135679", "wgs_master": "CALWWY000000000.1", "refseq_category": "na", "taxid": "707003", "species_taxid": "707003", "organism_name": "uncultured Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "BRZ_IE__bin24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_IE__bin24", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/385/355/GCA_944385355.1_BRZ_IE_bin24", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oscillospiraceae bacterium" ], "sample_taxid": [ "707003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.98, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2325266", "Number of Sequences": "109", "Longest Sequences (bp)": "214420", "N50 (bp)": "33386", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "2049", "Average Protein Length": "318.6", "Coding Ratio (%)": "84.2", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", "taxid": 2779352, "species_taxid": 2779352, "relation_to_type": "type", "validated": true, "ani": 81.7665, "matched_fragments": 388, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6151, 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"total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_024622565.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 78.4873, "matched_fragments": 215, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 78.4374, "matched_fragments": 216, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 78.4117, "matched_fragments": 179, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter acutus", "strain": "strain=MSJ-2", "accession": "GCA_018919205.1", "taxid": 2841504, "species_taxid": 2841504, "relation_to_type": "type", "validated": true, "ani": 77.8821, "matched_fragments": 131, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Evtepia gabavorous", "strain": "strain=KLE1738", "accession": "GCA_003425665.1", "taxid": 2211183, "species_taxid": 2211183, "relation_to_type": "type", "validated": true, "ani": 77.6583, "matched_fragments": 132, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 76.9814, "matched_fragments": 87, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium hattorii", "strain": "strain=APC922/41-1", "accession": "GCA_003287455.1", "taxid": 2935520, "species_taxid": 2935520, "relation_to_type": "type", "validated": true, "ani": 76.3215, "matched_fragments": 55, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.98, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_019118925.1", "gtdb_species": "s__An92 sp019118925", "ani": 98.6517, "matched_fragments": 594, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__An92", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002159175.1", "gtdb_species": "s__An92 sp002159175", "ani": 83.9534, 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