{
    "type": "genome",
    "identifier": "GCA_944385945.1",
    "organism": "uncultured Anaerofilum sp.",
    "title": "uncultured Anaerofilum sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944385945.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110135849",
        "wgs_master": "CALWZD000000000.1",
        "refseq_category": "na",
        "taxid": "269679",
        "species_taxid": "269679",
        "organism_name": "uncultured Anaerofilum sp.",
        "infraspecific_name": "",
        "isolate": "E05__bin356",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "E05__bin356",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/385/945/GCA_944385945.1_E05_bin356",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Anaerofilum sp."
        ],
        "sample_taxid": [
            "269679"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.23,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2169912",
        "Number of Sequences": "149",
        "Longest Sequences (bp)": "104009",
        "N50 (bp)": "23186",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "1866",
        "Average Protein Length": "320.1",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8413,
                "matched_fragments": 50,
                "total_fragments": 646,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.23,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002160015.1",
                "gtdb_species": "s__Anaerofilum faecale",
                "ani": 77.4461,
                "matched_fragments": 100,
                "total_fragments": 646,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019115305.1",
                "gtdb_species": "s__Anaerofilum excrementigallinarum",
                "ani": 77.2782,
                "matched_fragments": 99,
                "total_fragments": 646,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002160955.1",
                "gtdb_species": "s__Gemmiger_A avium",
                "ani": 77.0292,
                "matched_fragments": 58,
                "total_fragments": 646,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004345265.1",
                "gtdb_species": "s__Fournierella massiliensis",
                "ani": 76.8413,
                "matched_fragments": 50,
                "total_fragments": 646,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002315015.1",
                "gtdb_species": "s__Ruthenibacterium avium",
                "ani": 76.1156,
                "matched_fragments": 56,
                "total_fragments": 646,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.477,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Anaerofilum",
        "s__Anaerofilum sp944385945"
    ],
    "_genome_taxon": [
        "uncultured",
        "Anaerofilum",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Anaerofilum",
        "s__Anaerofilum sp944385945",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Anaerofilum",
        "Anaerofilum",
        "sp944385945"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}