{
    "type": "genome",
    "identifier": "GCA_944385985.1",
    "organism": "uncultured Faecalibacterium sp.",
    "title": "uncultured Faecalibacterium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944385985.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110135874",
        "wgs_master": "CALWZJ000000000.1",
        "refseq_category": "na",
        "taxid": "259315",
        "species_taxid": "259315",
        "organism_name": "uncultured Faecalibacterium sp.",
        "infraspecific_name": "",
        "isolate": "BRZ_DH__bin53",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_DH__bin53",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/385/985/GCA_944385985.1_BRZ_DH_bin53",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Faecalibacterium sp."
        ],
        "sample_taxid": [
            "259315"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.571 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2036486",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "112637",
        "N50 (bp)": "38448",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "1829",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4061,
                "matched_fragments": 396,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=JCM 31915",
                "accession": "GCA_010509575.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2799,
                "matched_fragments": 341,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1482,
                "matched_fragments": 346,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1385,
                "matched_fragments": 349,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium prausnitzii",
                "strain": "strain=ATCC 27768",
                "accession": "GCA_003324185.1",
                "taxid": 853,
                "species_taxid": 853,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.7411,
                "matched_fragments": 341,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002160895.1",
                "gtdb_species": "s__Faecalibacterium sp002160895",
                "ani": 97.9338,
                "matched_fragments": 602,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_904394215.1",
                "gtdb_species": "s__Faecalibacterium sp904394215",
                "ani": 87.9944,
                "matched_fragments": 476,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116585.1",
                "gtdb_species": "s__Faecalibacterium gallistercoris",
                "ani": 86.7562,
                "matched_fragments": 468,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_019119685.1",
                "gtdb_species": "s__Faecalibacterium faecigallinarum",
                "ani": 86.5793,
                "matched_fragments": 436,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019113345.1",
                "gtdb_species": "s__Faecalibacterium intestinigallinarum",
                "ani": 86.3409,
                "matched_fragments": 443,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002160915.1",
                "gtdb_species": "s__Faecalibacterium avium",
                "ani": 85.8789,
                "matched_fragments": 482,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.15,
        "genome_size": 3117349.846,
        "gc_content": 56.239,
        "coding_genes": 2678.333,
        "rRNA16S_genes": null,
        "tRNA_genes": 63.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Faecalibacterium",
        "s__Faecalibacterium sp002160895"
    ],
    "_genome_taxon": [
        "uncultured",
        "Faecalibacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Faecalibacterium",
        "s__Faecalibacterium sp002160895",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Faecalibacterium",
        "Faecalibacterium",
        "sp002160895"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}