{ "type": "genome", "identifier": "GCA_944387245.1", "organism": "uncultured Intestinimonas sp.", "title": "uncultured Intestinimonas sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944387245.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135764", "wgs_master": "CALXEE000000000.1", "refseq_category": "na", "taxid": "1689265", "species_taxid": "1689265", "organism_name": "uncultured Intestinimonas sp.", "infraspecific_name": "", "isolate": "BRZ_AV__bin35", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_AV__bin35", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/387/245/GCA_944387245.1_BRZ_AV_bin35", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Intestinimonas sp." ], "sample_taxid": [ "1689265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.650 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2311948", "Number of Sequences": "136", "Longest Sequences (bp)": "101427", "N50 (bp)": "24273", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "2165", "Average Protein Length": "307.3", "Coding Ratio (%)": "86.3", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=SRB-521-5-I", "accession": "GCA_004154955.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 81.0936, "matched_fragments": 370, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0178, "matched_fragments": 337, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 80.9968, "matched_fragments": 377, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=JCM 32125", "accession": "GCA_010508875.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 80.956, "matched_fragments": 360, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_024622565.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 80.948, "matched_fragments": 364, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", "taxid": 2779352, "species_taxid": 2779352, "relation_to_type": "type", "validated": true, "ani": 80.4447, "matched_fragments": 307, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium phoceensis", "strain": "strain=GD3", "accession": "GCA_001244495.1", "taxid": 1650661, "species_taxid": 1650661, "relation_to_type": "type", "validated": true, "ani": 79.6424, "matched_fragments": 241, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 78.2705, "matched_fragments": 183, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter acutus", "strain": "strain=MSJ-2", "accession": "GCA_018919205.1", "taxid": 2841504, "species_taxid": 2841504, "relation_to_type": "type", "validated": true, "ani": 77.968, "matched_fragments": 140, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 77.0585, "matched_fragments": 102, "total_fragments": 698, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900626145.1", "gtdb_species": "s__Intestinimonas timonensis", "ani": 92.1373, "matched_fragments": 587, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019115345.1", "gtdb_species": "s__Intestinimonas stercorigallinarum", "ani": 87.3272, "matched_fragments": 365, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019115785.1", "gtdb_species": "s__Intestinimonas merdavium", "ani": 86.732, "matched_fragments": 465, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019119795.1", "gtdb_species": "s__Intestinimonas pullistercoris", "ani": 83.7423, "matched_fragments": 368, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019117605.1", "gtdb_species": "s__Intestinimonas stercoravium", "ani": 82.9567, "matched_fragments": 388, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900540545.1", "gtdb_species": "s__Intestinimonas sp900540545", "ani": 82.1116, "matched_fragments": 395, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159175.1", "gtdb_species": "s__An92 sp002159175", "ani": 81.8598, "matched_fragments": 340, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__An92", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001244995.1", "gtdb_species": "s__Intestinimonas massiliensis", "ani": 81.6806, "matched_fragments": 395, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_019119165.1", "gtdb_species": "s__Flavonifractor intestinigallinarum", "ani": 81.6189, "matched_fragments": 301, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017811815.1", "gtdb_species": "s__Flavonifractor sp017811815", "ani": 81.4906, "matched_fragments": 345, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159265.1", "gtdb_species": "s__Flavonifractor sp002159265", "ani": 81.3887, "matched_fragments": 376, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002161675.1", "gtdb_species": "s__Enterenecus faecium", "ani": 79.5785, "matched_fragments": 211, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Enterenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.73", "min_intra_species_ani": "96.16", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_905205085.1", "gtdb_species": "s__Lawsonibacter sp900766145", "ani": 79.3747, "matched_fragments": 231, "total_fragments": 698, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.544, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 3231847.875, "gc_content": 59.223, "coding_genes": 3179.333, "rRNA16S_genes": 2.0, "tRNA_genes": 54.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Intestinimonas", "s__Intestinimonas sp944387245" ], "_genome_taxon": [ "uncultured", "Intestinimonas", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Intestinimonas", "s__Intestinimonas sp944387245", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Intestinimonas", "Intestinimonas", "sp944387245" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }