{ "type": "genome", "identifier": "GCA_944387295.1", "organism": "Pseudoflavonifractor capillosus", "title": "Pseudoflavonifractor capillosus", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "Institut National pour la Recherche Agronomique (FRANCE)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_944387295.1", "bioproject": "PRJEB53581", "biosample": "SAMEA110135807", "wgs_master": "CALXEK000000000.1", "refseq_category": "na", "taxid": "106588", "species_taxid": "106588", "organism_name": "Pseudoflavonifractor capillosus", "infraspecific_name": "", "isolate": "BRZ_BM__bin33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "BRZ_BM__bin33", "submitter": "Institut National pour la Recherche Agronomique (FRANCE)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/387/295/GCA_944387295.1_BRZ_BM_bin33", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoflavonifractor capillosus" ], "sample_taxid": [ "106588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.804 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 46.3, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { 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"below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_024622565.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 78.2796, "matched_fragments": 194, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 78.2782, "matched_fragments": 195, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 77.6273, "matched_fragments": 120, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter acutus", "strain": "strain=MSJ-2", "accession": "GCA_018919205.1", "taxid": 2841504, "species_taxid": 2841504, "relation_to_type": "type", "validated": true, "ani": 77.529, "matched_fragments": 95, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vescimonas coprocola", "strain": "strain=MM50", "accession": "GCA_018408575.1", "taxid": 2714355, "species_taxid": 2714355, "relation_to_type": "type", "validated": true, "ani": 76.9165, "matched_fragments": 73, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 76.8897, "matched_fragments": 84, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Papillibacter cinnamivorans", "strain": "strain=DSM 12816", "accession": "GCA_900176335.1", "taxid": 100176, "species_taxid": 100176, "relation_to_type": "type", "validated": true, "ani": 76.437, "matched_fragments": 51, "total_fragments": 771, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 46.3, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000169255.2", "gtdb_species": "s__Pseudoflavonifractor capillosus", "ani": 98.5174, "matched_fragments": 663, "total_fragments": 771, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_904419835.1", "gtdb_species": "s__Pseudoflavonifractor sp904419835", "ani": 91.06, "matched_fragments": 509, 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