{
    "type": "genome",
    "identifier": "GCA_944390095.1",
    "organism": "Brachyspira innocens",
    "title": "Brachyspira innocens",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944390095.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110136423",
        "wgs_master": "CALXOU000000000.1",
        "refseq_category": "na",
        "taxid": "13264",
        "species_taxid": "13264",
        "organism_name": "Brachyspira innocens",
        "infraspecific_name": "",
        "isolate": "BRZ_KN__bin22",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_KN__bin22",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/390/095/GCA_944390095.1_BRZ_KN_bin22",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brachyspira innocens"
        ],
        "sample_taxid": [
            "13264"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.868 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3191042",
        "Number of Sequences": "90",
        "Longest Sequences (bp)": "162257",
        "N50 (bp)": "55757",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.6",
        "Number of CDSs": "2785",
        "Average Protein Length": "319.5",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Brachyspira innocens",
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                "accession": "GCA_000384655.1",
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                "species_taxid": 13264,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 862,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brachyspira murdochii",
                "strain": "strain=DSM 12563",
                "accession": "GCA_000092845.1",
                "taxid": 84378,
                "species_taxid": 84378,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6907,
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                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hampsonii",
                "strain": "strain=NSH-16",
                "accession": "GCA_001746225.1",
                "taxid": 1287055,
                "species_taxid": 1287055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.348,
                "matched_fragments": 731,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hampsonii",
                "strain": "strain=NSH-16",
                "accession": "GCA_002214805.1",
                "taxid": 1287055,
                "species_taxid": 1287055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2085,
                "matched_fragments": 761,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira intermedia",
                "strain": "strain=PWS/A",
                "accession": "GCA_000223215.1",
                "taxid": 84377,
                "species_taxid": 84377,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7989,
                "matched_fragments": 781,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_000383255.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.506,
                "matched_fragments": 729,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B-78",
                "accession": "GCA_001676785.2",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3795,
                "matched_fragments": 738,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_001013005.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3642,
                "matched_fragments": 737,
                "total_fragments": 1020,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000384655.1",
                "gtdb_species": "s__Brachyspira innocens",
                "ani": 95.0749,
                "matched_fragments": 861,
                "total_fragments": 1020,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000092845.1",
                "gtdb_species": "s__Brachyspira murdochii",
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                "matched_fragments": 865,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002379365.1",
                "gtdb_species": "s__Brachyspira sp002379365",
                "ani": 92.3286,
                "matched_fragments": 861,
                "total_fragments": 1020,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001746205.1",
                "gtdb_species": "s__Brachyspira hampsonii_B",
                "ani": 85.6532,
                "matched_fragments": 752,
                "total_fragments": 1020,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002214805.1",
                "gtdb_species": "s__Brachyspira hampsonii",
                "ani": 85.3164,
                "matched_fragments": 753,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000316195.1",
                "gtdb_species": "s__Brachyspira hampsonii_C",
                "ani": 85.2633,
                "matched_fragments": 751,
                "total_fragments": 1020,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000223215.1",
                "gtdb_species": "s__Brachyspira intermedia",
                "ani": 83.8397,
                "matched_fragments": 777,
                "total_fragments": 1020,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001676785.2",
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                "matched_fragments": 739,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "99.16",
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                "num_clustered_genomes": 58,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": 0.738,
        "doubling_h": 0.477,
        "growth_tmp": 37.0,
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        "optimum_ph": 7.1,
        "genome_size": 3281611.0,
        "gc_content": 27.7,
        "coding_genes": 2613.666,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 33.25,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.25,
        "anaerobic_respiration": 0.75,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_gtdb_taxon": [
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        "p__Spirochaetota",
        "c__Brachyspirae",
        "o__Brachyspirales",
        "f__Brachyspiraceae",
        "g__Brachyspira",
        "s__Brachyspira innocens"
    ],
    "_genome_taxon": [
        "Brachyspira",
        "innocens",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Brachyspirae",
        "o__Brachyspirales",
        "f__Brachyspiraceae",
        "g__Brachyspira",
        "s__Brachyspira innocens",
        "Bacteria",
        "Spirochaetota",
        "Brachyspirae",
        "Brachyspirales",
        "Brachyspiraceae",
        "Brachyspira",
        "Brachyspira",
        "innocens"
    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}