{ "tc_result": [ { "organism_name": "Brachyspira pilosicoli", "strain": "strain=P43/6/78", "accession": "GCA_000325665.1", "taxid": 52584, "species_taxid": 52584, "relation_to_type": "type", "validated": true, "ani": 91.1561, "matched_fragments": 673, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira intermedia", "strain": "strain=PWS/A", "accession": "GCA_000223215.1", "taxid": 84377, "species_taxid": 84377, "relation_to_type": "type", "validated": true, "ani": 81.2387, "matched_fragments": 486, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B78", "accession": "GCA_000383255.1", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 80.7195, "matched_fragments": 486, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B78", "accession": "GCA_001013005.1", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 80.7014, "matched_fragments": 481, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira suanatina", "strain": "strain=AN4859/03", "accession": "GCA_001049755.1", "taxid": 381802, "species_taxid": 381802, "relation_to_type": "type", "validated": true, "ani": 80.6296, "matched_fragments": 468, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B-78", "accession": "GCA_001676785.2", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 80.5864, "matched_fragments": 500, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira innocens", "strain": "strain=B256", "accession": "GCA_000384655.1", "taxid": 13264, "species_taxid": 13264, "relation_to_type": "type", "validated": true, "ani": 80.4855, "matched_fragments": 493, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira murdochii", "strain": "strain=DSM 12563", "accession": "GCA_000092845.1", "taxid": 84378, "species_taxid": 84378, "relation_to_type": "type", "validated": true, "ani": 80.2901, "matched_fragments": 487, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira alvinipulli", "strain": "strain=ATCC 51933", "accession": "GCA_000518245.1", "taxid": 84379, "species_taxid": 84379, "relation_to_type": "type", "validated": true, "ani": 80.1844, "matched_fragments": 457, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hampsonii", "strain": "strain=NSH-16", "accession": "GCA_001746225.1", "taxid": 1287055, "species_taxid": 1287055, "relation_to_type": "type", "validated": true, "ani": 80.152, "matched_fragments": 476, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hampsonii", "strain": "strain=NSH-16", "accession": "GCA_002214805.1", "taxid": 1287055, "species_taxid": 1287055, "relation_to_type": "type", "validated": true, "ani": 80.1375, "matched_fragments": 479, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira aalborgi", "strain": "strain=513A", "accession": "GCA_008016455.1", "taxid": 29522, "species_taxid": 29522, "relation_to_type": "type", "validated": true, "ani": 76.235, "matched_fragments": 226, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.99, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000325665.1", "gtdb_species": "s__Brachyspira pilosicoli", "ani": 91.1384, "matched_fragments": 674, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_008016535.1", "gtdb_species": "s__Brachyspira pilosicoli_A", "ani": 91.0817, "matched_fragments": 618, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009755885.1", "gtdb_species": "s__Brachyspira sp009755885", "ani": 90.9278, "matched_fragments": 661, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001049755.1", "gtdb_species": "s__Brachyspira suanatina", "ani": 80.5963, "matched_fragments": 470, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001676785.2", "gtdb_species": "s__Brachyspira hyodysenteriae", "ani": 80.5494, "matched_fragments": 503, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCF_000384655.1", "gtdb_species": "s__Brachyspira innocens", "ani": 80.4641, "matched_fragments": 495, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000092845.1", "gtdb_species": "s__Brachyspira murdochii", "ani": 80.3024, "matched_fragments": 488, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002379365.1", "gtdb_species": "s__Brachyspira sp002379365", "ani": 80.227, "matched_fragments": 479, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002214805.1", "gtdb_species": "s__Brachyspira hampsonii", "ani": 80.1224, "matched_fragments": 480, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.90", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000518245.1", "gtdb_species": "s__Brachyspira alvinipulli", "ani": 80.121, "matched_fragments": 464, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001746205.1", "gtdb_species": "s__Brachyspira hampsonii_B", "ani": 80.1086, "matched_fragments": 473, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000316195.1", "gtdb_species": "s__Brachyspira hampsonii_C", "ani": 80.0016, "matched_fragments": 460, "total_fragments": 800, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" } ] }