{
    "type": "genome",
    "identifier": "GCA_944392995.1",
    "organism": "uncultured Brachyspira sp.",
    "title": "uncultured Brachyspira sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut National pour la Recherche Agronomique (FRANCE)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_944392995.1",
        "bioproject": "PRJEB53581",
        "biosample": "SAMEA110136418",
        "wgs_master": "CALXYP000000000.1",
        "refseq_category": "na",
        "taxid": "221953",
        "species_taxid": "221953",
        "organism_name": "uncultured Brachyspira sp.",
        "infraspecific_name": "",
        "isolate": "BRZ_QV__bin83",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "BRZ_QV__bin83",
        "submitter": "Institut National pour la Recherche Agronomique (FRANCE)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/944/392/995/GCA_944392995.1_BRZ_QV_bin83",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Brachyspira sp."
        ],
        "sample_taxid": [
            "221953"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.732 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.99,
        "contamination": 2.08,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2676255",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "91321",
        "N50 (bp)": "20823",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.1",
        "Number of CDSs": "2237",
        "Average Protein Length": "318.8",
        "Coding Ratio (%)": "79.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brachyspira pilosicoli",
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                "species_taxid": 52584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1561,
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                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira intermedia",
                "strain": "strain=PWS/A",
                "accession": "GCA_000223215.1",
                "taxid": 84377,
                "species_taxid": 84377,
                "relation_to_type": "type",
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                "ani": 81.2387,
                "matched_fragments": 486,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
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                "accession": "GCA_000383255.1",
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                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7195,
                "matched_fragments": 486,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_001013005.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7014,
                "matched_fragments": 481,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira suanatina",
                "strain": "strain=AN4859/03",
                "accession": "GCA_001049755.1",
                "taxid": 381802,
                "species_taxid": 381802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6296,
                "matched_fragments": 468,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B-78",
                "accession": "GCA_001676785.2",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5864,
                "matched_fragments": 500,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira innocens",
                "strain": "strain=B256",
                "accession": "GCA_000384655.1",
                "taxid": 13264,
                "species_taxid": 13264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4855,
                "matched_fragments": 493,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira murdochii",
                "strain": "strain=DSM 12563",
                "accession": "GCA_000092845.1",
                "taxid": 84378,
                "species_taxid": 84378,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2901,
                "matched_fragments": 487,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira alvinipulli",
                "strain": "strain=ATCC 51933",
                "accession": "GCA_000518245.1",
                "taxid": 84379,
                "species_taxid": 84379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1844,
                "matched_fragments": 457,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hampsonii",
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                "accession": "GCA_001746225.1",
                "taxid": 1287055,
                "species_taxid": 1287055,
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                "validated": true,
                "ani": 80.152,
                "matched_fragments": 476,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hampsonii",
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                "accession": "GCA_002214805.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1375,
                "matched_fragments": 479,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira aalborgi",
                "strain": "strain=513A",
                "accession": "GCA_008016455.1",
                "taxid": 29522,
                "species_taxid": 29522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.235,
                "matched_fragments": 226,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 2.08,
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        "gtdb_result": [
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                "accession": "GCF_000325665.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "97.84",
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                "num_clustered_genomes": 19,
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            {
                "accession": "GCF_008016535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_009755885.1",
                "gtdb_species": "s__Brachyspira sp009755885",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001049755.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
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            {
                "accession": "GCF_001676785.2",
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            },
            {
                "accession": "GCF_002379365.1",
                "gtdb_species": "s__Brachyspira sp002379365",
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            {
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            },
            {
                "accession": "GCF_001746205.1",
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            },
            {
                "accession": "GCF_000316195.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "c__Brachyspirae",
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    "_genome_taxon": [
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        "p__Spirochaetota",
        "c__Brachyspirae",
        "o__Brachyspirales",
        "f__Brachyspiraceae",
        "g__Brachyspira",
        "s__Brachyspira sp934747485",
        "Bacteria",
        "Spirochaetota",
        "Brachyspirae",
        "Brachyspirales",
        "Brachyspiraceae",
        "Brachyspira",
        "Brachyspira",
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    ],
    "_meo": [
        {
            "id": "MEO_0000460",
            "label": "cecum"
        }
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}