<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2022-07-07T00:00:00.000" last_update="2022-07-07T19:27:30.000" submission_date="2022-07-12T10:03:29.482" id="29651012" accession="SAMEA110271899">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA110271899</Id>     <Id db="SRA">ERS12369513</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: SRR13040390_bin.1_metaWRAP_v1.3_MAG</Title>     <Organism taxonomy_id="153152" taxonomy_name="uncultured Lactobacillus sp.">       <OrganismName>uncultured Lactobacillus sp.</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13040390 of study SRP292297.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2022-07-07</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2022-07-07</Attribute>     <Attribute attribute_name="External Id">SAMEA110271899</Attribute>     <Attribute attribute_name="INSDC center alias">EMG</Attribute>     <Attribute attribute_name="INSDC center name">EMG</Attribute>     <Attribute attribute_name="INSDC first public">2022-07-07T16:19:48Z</Attribute>     <Attribute attribute_name="INSDC last update">2022-07-07T16:19:48Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">SRR13040390_bin.1_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">metaSPAdes v3.15.3</Attribute>     <Attribute attribute_name="binning parameters">MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.</Attribute>     <Attribute attribute_name="binning software">metaWRAP v1.3</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">2018-01-01</Attribute>     <Attribute attribute_name="completeness score">99.17</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">0.0</Attribute>     <Attribute attribute_name="environment (biome)" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">Pig digestive system</Attribute>     <Attribute attribute_name="environment (feature)" harmonized_name="env_local_scale" display_name="local-scale environmental context">Colon</Attribute>     <Attribute attribute_name="environment (material)" harmonized_name="env_medium" display_name="environmental medium">Feces</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">Italy</Attribute>     <Attribute attribute_name="geographic location (latitude)">38.11</Attribute>     <Attribute attribute_name="geographic location (longitude)">15.33</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">pig gut metagenome</Attribute>     <Attribute attribute_name="metagenomic source">pig gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">In this study we report fort the first time the characterization of the fecal microbiome of an ancient autochthonous pig breed that lives in the woods of the Nebrodi and Madonie mountains on the northern coast of the Mediterranean island of Sicily (Italy). Using whole-metagenome shotgun sequencing (WGS) we provide a detailed taxonomic and functional profiling of the microbial community associated with this rare and endangered-maintained pig breed.</Attribute>     <Attribute attribute_name="sample derived from">SAMN16776299</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">SRR13040390_bin.1_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="sequencing method">NextSeq 500</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2022-07-12T10:03:29.482"/> </BioSample> </BioSampleSet>
