{
    "type": "genome",
    "identifier": "GCA_945267035.1",
    "organism": "uncultured Neisseriaceae bacterium",
    "title": "uncultured Neisseriaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945267035.1",
        "bioproject": "PRJEB52681",
        "biosample": "SAMEA110290033",
        "wgs_master": "CALYOS000000000.1",
        "refseq_category": "na",
        "taxid": "208548",
        "species_taxid": "208548",
        "organism_name": "uncultured Neisseriaceae bacterium",
        "infraspecific_name": "",
        "isolate": "SRR11267043_bin.6_metawrap_v1.3.0_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/13",
        "asm_name": "SRR11267043_bin.6_metawrap_v1.3.0_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/267/035/GCA_945267035.1_SRR11267043_bin.6_metawrap_v1.3.0_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-13",
    "dateModified": "2022-07-13",
    "datePublished": "2022-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Neisseriaceae bacterium"
        ],
        "sample_taxid": [
            "208548"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.665 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 85.42,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2322479",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "122386",
        "N50 (bp)": "48276",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.4",
        "Number of CDSs": "1953",
        "Average Protein Length": "301.1",
        "Coding Ratio (%)": "76.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Snodgrassella gandavensis",
                "strain": "strain=LMG 30236",
                "accession": "GCA_914768025.1",
                "taxid": 2946698,
                "species_taxid": 2946698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4329,
                "matched_fragments": 194,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella communis",
                "strain": "strain=LMG 28360",
                "accession": "GCA_914768045.1",
                "taxid": 2946699,
                "species_taxid": 2946699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0164,
                "matched_fragments": 204,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
                "strain": "strain=wkB2",
                "accession": "GCA_000600005.1",
                "taxid": 1196083,
                "species_taxid": 1196083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9363,
                "matched_fragments": 182,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
                "strain": "strain=wkB2",
                "accession": "GCA_022870965.1",
                "taxid": 1196083,
                "species_taxid": 1196083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9152,
                "matched_fragments": 183,
                "total_fragments": 736,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 85.42,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000725195.1",
                "gtdb_species": "s__Snodgrassella alvi_G",
                "ani": 79.2331,
                "matched_fragments": 167,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002777855.1",
                "gtdb_species": "s__Snodgrassella alvi_E",
                "ani": 78.5395,
                "matched_fragments": 177,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "98.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002777425.1",
                "gtdb_species": "s__Snodgrassella alvi_B",
                "ani": 78.4321,
                "matched_fragments": 188,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002777825.1",
                "gtdb_species": "s__Snodgrassella alvi_C",
                "ani": 78.4165,
                "matched_fragments": 191,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002777745.1",
                "gtdb_species": "s__Snodgrassella alvi_D",
                "ani": 78.329,
                "matched_fragments": 196,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900094895.1",
                "gtdb_species": "s__Snodgrassella sp900094895",
                "ani": 78.0158,
                "matched_fragments": 204,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000600005.1",
                "gtdb_species": "s__Snodgrassella alvi",
                "ani": 77.8995,
                "matched_fragments": 181,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 47,
                "status": "-"
            },
            {
                "accession": "GCF_001590725.1",
                "gtdb_species": "s__Snodgrassella sp001590725",
                "ani": 76.6211,
                "matched_fragments": 76,
                "total_fragments": 736,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.011,
        "cell_length": 0.186,
        "doubling_h": -0.218,
        "growth_tmp": 34.836,
        "optimum_tmp": 31.968,
        "optimum_ph": 7.0,
        "genome_size": 2462286.228,
        "gc_content": 51.815,
        "coding_genes": 2231.82,
        "rRNA16S_genes": 3.842,
        "tRNA_genes": 57.327,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.285,
        "range_salinity": null,
        "facultative_respiration": 0.09,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.909,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.322,
        "coccus_cell_shape": 0.548,
        "filament_cell_shape": 0.129,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Snodgrassella",
        "s__Snodgrassella sp945267035"
    ],
    "_genome_taxon": [
        "uncultured",
        "Neisseriaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Snodgrassella",
        "s__Snodgrassella sp945267035",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Neisseriaceae",
        "Snodgrassella",
        "Snodgrassella",
        "sp945267035"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}