{
    "type": "genome",
    "identifier": "GCA_945269285.1",
    "organism": "uncultured Gilliamella sp.",
    "title": "uncultured Gilliamella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945269285.1",
        "bioproject": "PRJEB52681",
        "biosample": "SAMEA110290043",
        "wgs_master": "CALYOW000000000.1",
        "refseq_category": "na",
        "taxid": "1193505",
        "species_taxid": "1193505",
        "organism_name": "uncultured Gilliamella sp.",
        "infraspecific_name": "",
        "isolate": "SRR11267052_bin.11_metawrap_v1.3.0_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/13",
        "asm_name": "SRR11267052_bin.11_metawrap_v1.3.0_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/269/285/GCA_945269285.1_SRR11267052_bin.11_metawrap_v1.3.0_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-13",
    "dateModified": "2022-07-13",
    "datePublished": "2022-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Gilliamella sp."
        ],
        "sample_taxid": [
            "1193505"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.462 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.84,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1632638",
        "Number of Sequences": "250",
        "Longest Sequences (bp)": "71427",
        "N50 (bp)": "7303",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.4",
        "Number of CDSs": "1286",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "73.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gilliamella apis",
                "strain": "strain=NO3",
                "accession": "GCA_002142155.1",
                "taxid": 1970738,
                "species_taxid": 1970738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6662,
                "matched_fragments": 348,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=DSM 104097",
                "accession": "GCA_003201455.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.7115,
                "matched_fragments": 262,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=wkB1",
                "accession": "GCA_000599985.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.5845,
                "matched_fragments": 266,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella intestini",
                "strain": "strain=R-53144",
                "accession": "GCA_900094935.1",
                "taxid": 1798183,
                "species_taxid": 1798183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6088,
                "matched_fragments": 202,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella bombicola",
                "strain": "strain=R-53248",
                "accession": "GCA_900094945.1",
                "taxid": 1798182,
                "species_taxid": 1798182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5529,
                "matched_fragments": 212,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zophobihabitans entericus",
                "strain": "strain=IPMB12",
                "accession": "GCA_011745665.1",
                "taxid": 1635327,
                "species_taxid": 1635327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7372,
                "matched_fragments": 50,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frischella japonica",
                "strain": "strain=Ac13",
                "accession": "GCA_014489845.1",
                "taxid": 2741544,
                "species_taxid": 2741544,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1722,
                "matched_fragments": 96,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Orbus hercynius",
                "strain": "strain=DSM 22228",
                "accession": "GCA_003634275.1",
                "taxid": 593135,
                "species_taxid": 593135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.137,
                "matched_fragments": 79,
                "total_fragments": 418,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.84,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003202775.1",
                "gtdb_species": "s__Gilliamella apis_A",
                "ani": 98.4051,
                "matched_fragments": 385,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002142155.1",
                "gtdb_species": "s__Gilliamella apis",
                "ani": 94.6662,
                "matched_fragments": 348,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_002142215.1",
                "gtdb_species": "s__Gilliamella sp002142215",
                "ani": 93.7572,
                "matched_fragments": 346,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003202915.1",
                "gtdb_species": "s__Gilliamella apicola_Q",
                "ani": 84.8889,
                "matched_fragments": 355,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.60",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001693745.1",
                "gtdb_species": "s__Gilliamella apicola_E",
                "ani": 83.3889,
                "matched_fragments": 296,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001693755.1",
                "gtdb_species": "s__Gilliamella apicola_F",
                "ani": 80.03,
                "matched_fragments": 231,
                "total_fragments": 418,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2569455.19,
        "gc_content": 34.05,
        "coding_genes": 2731.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella apis_A"
    ],
    "_genome_taxon": [
        "uncultured",
        "Gilliamella",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella apis_A",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Gilliamella",
        "Gilliamella",
        "apis",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}