{
    "type": "genome",
    "identifier": "GCA_945269515.1",
    "organism": "uncultured Gilliamella sp.",
    "title": "uncultured Gilliamella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945269515.1",
        "bioproject": "PRJEB52681",
        "biosample": "SAMEA110290077",
        "wgs_master": "CALYOX000000000.1",
        "refseq_category": "na",
        "taxid": "1193505",
        "species_taxid": "1193505",
        "organism_name": "uncultured Gilliamella sp.",
        "infraspecific_name": "",
        "isolate": "SRR11267075_bin.4_metawrap_v1.3.0_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/13",
        "asm_name": "SRR11267075_bin.4_metawrap_v1.3.0_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/269/515/GCA_945269515.1_SRR11267075_bin.4_metawrap_v1.3.0_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-13",
    "dateModified": "2022-07-13",
    "datePublished": "2022-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Gilliamella sp."
        ],
        "sample_taxid": [
            "1193505"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.410 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 41.67,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1443476",
        "Number of Sequences": "91",
        "Longest Sequences (bp)": "79410",
        "N50 (bp)": "24564",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.4",
        "Number of CDSs": "1177",
        "Average Protein Length": "336.2",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gilliamella apis",
                "strain": "strain=NO3",
                "accession": "GCA_002142155.1",
                "taxid": 1970738,
                "species_taxid": 1970738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9507,
                "matched_fragments": 200,
                "total_fragments": 436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella bombicola",
                "strain": "strain=R-53248",
                "accession": "GCA_900094945.1",
                "taxid": 1798182,
                "species_taxid": 1798182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9349,
                "matched_fragments": 193,
                "total_fragments": 436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=wkB1",
                "accession": "GCA_000599985.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7568,
                "matched_fragments": 233,
                "total_fragments": 436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=DSM 104097",
                "accession": "GCA_003201455.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7231,
                "matched_fragments": 235,
                "total_fragments": 436,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella intestini",
                "strain": "strain=R-53144",
                "accession": "GCA_900094935.1",
                "taxid": 1798183,
                "species_taxid": 1798183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5281,
                "matched_fragments": 208,
                "total_fragments": 436,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 41.67,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001690185.1",
                "gtdb_species": "s__Gilliamella apicola_I",
                "ani": 89.4666,
                "matched_fragments": 359,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001693745.1",
                "gtdb_species": "s__Gilliamella apicola_E",
                "ani": 80.5727,
                "matched_fragments": 208,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003202775.1",
                "gtdb_species": "s__Gilliamella apis_A",
                "ani": 79.1538,
                "matched_fragments": 209,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_003202915.1",
                "gtdb_species": "s__Gilliamella apicola_Q",
                "ani": 79.1238,
                "matched_fragments": 203,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.60",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001690355.1",
                "gtdb_species": "s__Gilliamella apicola_A",
                "ani": 79.0502,
                "matched_fragments": 204,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002142215.1",
                "gtdb_species": "s__Gilliamella sp002142215",
                "ani": 78.9625,
                "matched_fragments": 195,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002142155.1",
                "gtdb_species": "s__Gilliamella apis",
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                "matched_fragments": 200,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_001690595.1",
                "gtdb_species": "s__Gilliamella apicola_M",
                "ani": 78.8131,
                "matched_fragments": 207,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001690275.1",
                "gtdb_species": "s__Gilliamella apicola_C",
                "ani": 78.783,
                "matched_fragments": 196,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "96.31",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000599985.1",
                "gtdb_species": "s__Gilliamella apicola",
                "ani": 78.7757,
                "matched_fragments": 232,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_001693435.1",
                "gtdb_species": "s__Gilliamella apicola_N",
                "ani": 78.7518,
                "matched_fragments": 237,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "97.54",
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_900103255.1",
                "gtdb_species": "s__Gilliamella bombi",
                "ani": 78.7029,
                "matched_fragments": 217,
                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "97.07",
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                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_009795845.1",
                "gtdb_species": "s__Gilliamella sp009795845",
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                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900103085.1",
                "gtdb_species": "s__Gilliamella mensalis",
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                "total_fragments": 436,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001690495.1",
                "gtdb_species": "s__Gilliamella apicola_G",
                "ani": 78.6255,
                "matched_fragments": 208,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "99.43",
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                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 2569455.19,
        "gc_content": 34.05,
        "coding_genes": 2731.333,
        "rRNA16S_genes": 4.0,
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        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella sp019469185"
    ],
    "_genome_taxon": [
        "uncultured",
        "Gilliamella",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella sp019469185",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Gilliamella",
        "Gilliamella",
        "sp019469185"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}